Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

RCG60547

Gene

Zfp280b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: GO_Central
  • DNA-binding transcription factor activity Source: GO_Central

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
RCG60547Imported
Submitted name:
Zinc finger protein 280B-likeImported
Gene namesi
Name:Zfp280bImported
Synonyms:LOC100909869Imported, LOC103690173Imported
ORF Names:rCG_60547Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 20

Organism-specific databases

RGDi6501280 LOC100909869
9210655 LOC103690173
1565460 Zfp280b

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD3ZNU4

Expressioni

Gene expression databases

BgeeiENSRNOG00000028441 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000067335

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini332 – 360C2H2-typeInterPro annotationAdd BLAST29

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00530000063300
OMAiRRKKYGH
TreeFamiTF331707

Family and domain databases

InterProiView protein in InterPro
IPR025243 DUF4195
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF13836 DUF4195, 1 hit
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 6 hits
SUPFAMiSSF57667 SSF57667, 1 hit
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 2 hits
PS50157 ZINC_FINGER_C2H2_2, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZNU4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEQPYVVDDD ESDPEPQPRS QEPIQVLDED DSEDAELIFV GVENVKEDAE
60 70 80 90 100
LIFVGVTSTS QPANSNILNR VTPGSRLKRK HDRLRETTTQ RLQPSPPAAP
110 120 130 140 150
TSEAAIVLPV SPAESRSTDS PIIIEPLSES DYKSNSQVVP SSSSKCCSPL
160 170 180 190 200
ATLSSSESGP ARAACSGGGL NESLYVSKCH FSINPQRPER SIEIVEELSS
210 220 230 240 250
ALPPSGPFHT SNAQQRTPSL EAPKSLNLFV NGAPLSGDPV HPRQDSGSVD
260 270 280 290 300
TDFSSLASPE TFDPKKGSLT LLLSDFYYGQ YKGEGKPEQK THTTFKCPSC
310 320 330 340 350
SKALKNVKFM NHTKHHLELE RQGSDEAWES HTTCLRCHRL FASPFQLECH
360 370 380 390 400
IDRVHTAPDP CVVCKICELS FETEQVLLEH MKDNHKPGEM PYVCQVCKYR
410 420 430 440 450
SSVFADVETH FTKCHVNTKN LLCPFCLKIF RTGMPYMCHC RGHWERNGHQ
460 470 480 490 500
CSKCRLQFLT FKEKMEHKTQ CHQMFRKPKQ LEGLPPETKV VIQVSVKPVE
510 520 530
AESVEVASIT VSTTDWEPSC PRSQGRLSQK PH
Length:532
Mass (Da):59,286
Last modified:April 20, 2010 - v1
Checksum:i7CD10259093CB039
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC125672 Genomic DNA No translation available.
CH473988 Genomic DNA Translation: EDL97162.1
RefSeqiNP_001099854.1, NM_001106384.1
XP_006256390.1, XM_006256328.3
XP_008771098.1, XM_008772876.2
XP_008772074.1, XM_008773852.2
UniGeneiRn.23491

Genome annotation databases

EnsembliENSRNOT00000033298; ENSRNOP00000034023; ENSRNOG00000028441
ENSRNOT00000081590; ENSRNOP00000074859; ENSRNOG00000052545
ENSRNOT00000081733; ENSRNOP00000073790; ENSRNOG00000028441
ENSRNOT00000082344; ENSRNOP00000068817; ENSRNOG00000053807
ENSRNOT00000089429; ENSRNOP00000069942; ENSRNOG00000057301
GeneIDi100909869
103690173
294343
KEGGirno:100909869
rno:103690173
rno:294343
UCSCiRGD:1565460 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC125672 Genomic DNA No translation available.
CH473988 Genomic DNA Translation: EDL97162.1
RefSeqiNP_001099854.1, NM_001106384.1
XP_006256390.1, XM_006256328.3
XP_008771098.1, XM_008772876.2
XP_008772074.1, XM_008773852.2
UniGeneiRn.23491

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000067335

Proteomic databases

PRIDEiD3ZNU4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000033298; ENSRNOP00000034023; ENSRNOG00000028441
ENSRNOT00000081590; ENSRNOP00000074859; ENSRNOG00000052545
ENSRNOT00000081733; ENSRNOP00000073790; ENSRNOG00000028441
ENSRNOT00000082344; ENSRNOP00000068817; ENSRNOG00000053807
ENSRNOT00000089429; ENSRNOP00000069942; ENSRNOG00000057301
GeneIDi100909869
103690173
294343
KEGGirno:100909869
rno:103690173
rno:294343
UCSCiRGD:1565460 rat

Organism-specific databases

CTDi64453
RGDi6501280 LOC100909869
9210655 LOC103690173
1565460 Zfp280b

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00530000063300
OMAiRRKKYGH
TreeFamiTF331707

Gene expression databases

BgeeiENSRNOG00000028441 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

InterProiView protein in InterPro
IPR025243 DUF4195
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF13836 DUF4195, 1 hit
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 6 hits
SUPFAMiSSF57667 SSF57667, 1 hit
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 2 hits
PS50157 ZINC_FINGER_C2H2_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZNU4_RAT
AccessioniPrimary (citable) accession number: D3ZNU4
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again