Zfp280b

Functionⁱ

GO - Molecular functionⁱ

DNA binding
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
DNA-binding transcription factor activity
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

regulation of transcription, DNA-templated
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Ligand	Metal-binding, Zinc

Ligand

Metal-binding, Zinc

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: RCG60547Imported Submitted name: Zinc finger protein 280B-likeImported
Gene namesⁱ	Name:Zfp280bImported Synonyms:LOC100909869Imported, LOC103690173Imported ORF Names:rCG_60547Imported
Organismⁱ	Rattus norvegicus (Rat)Imported
Taxonomic identifierⁱ	10116 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus
Proteomesⁱ	UP000002494 Componentⁱ: Chromosome 20

Organism-specific databases

Rat genome database More...RGDⁱ	6501280 LOC100909869 9210655 LOC103690173 1565460 Zfp280b

RGDⁱ

6501280 LOC100909869
9210655 LOC103690173
1565460 Zfp280b

Subcellular locationⁱ

GO - Cellular component

PTM / Processingⁱ

Proteomic databases

PRIDEⁱ	D3ZNU4

PRIDEⁱ

D3ZNU4

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSRNOG00000028441 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Bgeeⁱ

ENSRNOG00000028441 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000067335

STRINGⁱ

10116.ENSRNOP00000067335

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	332 – 360	C2H2-typeInterPro annotationAdd BLAST		29

Keywords - Domainⁱ

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGⁱ	KOG1721 Eukaryota COG5048 LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00530000063300
OMAⁱ	RRKKYGH
TreeFamⁱ	TF331707

Family and domain databases

InterProⁱ	View protein in InterPro IPR025243 DUF4195 IPR036236 Znf_C2H2_sf IPR013087 Znf_C2H2_type
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF13836 DUF4195, 1 hit
SMARTⁱ	View protein in SMART SM00355 ZnF_C2H2, 6 hits
SUPFAMⁱ	SSF57667 SSF57667, 1 hit
PROSITEⁱ	View protein in PROSITE PS00028 ZINC_FINGER_C2H2_1, 2 hits PS50157 ZINC_FINGER_C2H2_2, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

D3ZNU4-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MEQPYVVDDD ESDPEPQPRS QEPIQVLDED DSEDAELIFV GVENVKEDAE 
        60         70         80         90        100
LIFVGVTSTS QPANSNILNR VTPGSRLKRK HDRLRETTTQ RLQPSPPAAP 
       110        120        130        140        150
TSEAAIVLPV SPAESRSTDS PIIIEPLSES DYKSNSQVVP SSSSKCCSPL 
       160        170        180        190        200
ATLSSSESGP ARAACSGGGL NESLYVSKCH FSINPQRPER SIEIVEELSS 
       210        220        230        240        250
ALPPSGPFHT SNAQQRTPSL EAPKSLNLFV NGAPLSGDPV HPRQDSGSVD 
       260        270        280        290        300
TDFSSLASPE TFDPKKGSLT LLLSDFYYGQ YKGEGKPEQK THTTFKCPSC 
       310        320        330        340        350
SKALKNVKFM NHTKHHLELE RQGSDEAWES HTTCLRCHRL FASPFQLECH 
       360        370        380        390        400
IDRVHTAPDP CVVCKICELS FETEQVLLEH MKDNHKPGEM PYVCQVCKYR 
       410        420        430        440        450
SSVFADVETH FTKCHVNTKN LLCPFCLKIF RTGMPYMCHC RGHWERNGHQ 
       460        470        480        490        500
CSKCRLQFLT FKEKMEHKTQ CHQMFRKPKQ LEGLPPETKV VIQVSVKPVE 
       510        520        530 
AESVEVASIT VSTTDWEPSC PRSQGRLSQK PH

Length:532

Mass (Da):59,286

Last modified:April 20, 2010 - v1

Checksum:ⁱ7CD10259093CB039

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AC125672 Genomic DNA No translation available. CH473988 Genomic DNA Translation: EDL97162.1
NCBI Reference Sequences More...RefSeqⁱ	NP_001099854.1, NM_001106384.1 XP_006256390.1, XM_006256328.3 XP_008771098.1, XM_008772876.2 XP_008772074.1, XM_008773852.2
UniGeneⁱ	Rn.23491

Genome annotation databases

Ensemblⁱ	ENSRNOT00000033298; ENSRNOP00000034023; ENSRNOG00000028441 ENSRNOT00000081590; ENSRNOP00000074859; ENSRNOG00000052545 ENSRNOT00000081733; ENSRNOP00000073790; ENSRNOG00000028441 ENSRNOT00000082344; ENSRNOP00000068817; ENSRNOG00000053807 ENSRNOT00000089429; ENSRNOP00000069942; ENSRNOG00000057301
GeneIDⁱ	100909869 103690173 294343
KEGGⁱ	rno:100909869 rno:103690173 rno:294343
UCSC genome browser More...UCSCⁱ	RGD:1565460 rat

Similar proteinsⁱ

50% Identity

Protein	Similar proteins		Species	Score	Length	Source
D3ZNU4	Zinc finger protein 280B		MUSPF		557	UniRef50_D3ZNU4
zinc finger protein 280B-like		Enhydra lutris kenyoni		556
zinc finger protein 280B-like		LEPWE		544
zinc finger protein 280B		NEOSC		544
zinc finger protein 280B		ODORO		544
+28

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AC125672 Genomic DNA No translation available. CH473988 Genomic DNA Translation: EDL97162.1
RefSeqⁱ	NP_001099854.1, NM_001106384.1 XP_006256390.1, XM_006256328.3 XP_008771098.1, XM_008772876.2 XP_008772074.1, XM_008773852.2
UniGeneⁱ	Rn.23491

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000067335

STRINGⁱ

10116.ENSRNOP00000067335

Proteomic databases

PRIDEⁱ	D3ZNU4

PRIDEⁱ

D3ZNU4

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSRNOT00000033298; ENSRNOP00000034023; ENSRNOG00000028441 ENSRNOT00000081590; ENSRNOP00000074859; ENSRNOG00000052545 ENSRNOT00000081733; ENSRNOP00000073790; ENSRNOG00000028441 ENSRNOT00000082344; ENSRNOP00000068817; ENSRNOG00000053807 ENSRNOT00000089429; ENSRNOP00000069942; ENSRNOG00000057301
GeneIDⁱ	100909869 103690173 294343
KEGGⁱ	rno:100909869 rno:103690173 rno:294343
UCSCⁱ	RGD:1565460 rat

Organism-specific databases

CTDⁱ	64453
RGDⁱ	6501280 LOC100909869 9210655 LOC103690173 1565460 Zfp280b

Phylogenomic databases

eggNOGⁱ	KOG1721 Eukaryota COG5048 LUCA
GeneTreeⁱ	ENSGT00530000063300
OMAⁱ	RRKKYGH
TreeFamⁱ	TF331707

Gene expression databases

Bgeeⁱ	ENSRNOG00000028441 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Bgeeⁱ

ENSRNOG00000028441 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

InterProⁱ	View protein in InterPro IPR025243 DUF4195 IPR036236 Znf_C2H2_sf IPR013087 Znf_C2H2_type
Pfamⁱ	View protein in Pfam PF13836 DUF4195, 1 hit
SMARTⁱ	View protein in SMART SM00355 ZnF_C2H2, 6 hits
SUPFAMⁱ	SSF57667 SSF57667, 1 hit
PROSITEⁱ	View protein in PROSITE PS00028 ZINC_FINGER_C2H2_1, 2 hits PS50157 ZINC_FINGER_C2H2_2, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	D3ZNU4_RAT
Accessionⁱ	D3ZNU4Primary (citable) accession number: D3ZNU4
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	April 20, 2010
	Last sequence update:	April 20, 2010
	Last modified:	November 7, 2018
	This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteomeImported

UniProtKB

UniParc

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UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - D3ZNU4 (D3ZNU4_RAT)

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RCG60547

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<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Keywords - Domaini

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

PTM / Processingⁱ

Expressionⁱ

Interactionⁱ

Family & Domainsⁱ

Keywords - Domainⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ