UniProtKB - D3ZMQ7 (D3ZMQ7_RAT)
Protein
Submitted name:
RCG47471, isoform CRA_b
Gene
Wdr74
Organism
Rattus norvegicus (Rat)
Status
Functioni
GO - Biological processi
- blastocyst formation Source: RGD
- ribosomal large subunit biogenesis Source: RGD
- RNA metabolic process Source: RGD
- rRNA processing Source: RGD
Names & Taxonomyi
Protein namesi | Submitted name: RCG47471, isoform CRA_bImportedSubmitted name: WD repeat domain 74Imported |
Gene namesi | Name:Wdr74Imported ORF Names:rCG_47471Imported |
Organismi | Rattus norvegicus (Rat)Imported |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 1582881, Wdr74 |
Subcellular locationi
Nucleus
Other locations
- preribosome, large subunit precursor Source: GO_Central
Expressioni
Gene expression databases
Bgeei | ENSRNOG00000042878, Expressed in testis and 22 other tissues |
ExpressionAtlasi | D3ZMQ7, baseline and differential |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 302 – 366 | DisorderedSequence analysisAdd BLAST | 65 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 333 – 351 | PolyampholyteSequence analysisAdd BLAST | 19 | |
Compositional biasi | 352 – 366 | BasicSequence analysisAdd BLAST | 15 |
Phylogenomic databases
eggNOGi | KOG3881, Eukaryota |
GeneTreei | ENSGT00390000015119 |
Family and domain databases
Gene3Di | 2.130.10.10, 2 hits |
InterProi | View protein in InterPro IPR015943, WD40/YVTN_repeat-like_dom_sf IPR001680, WD40_repeat IPR036322, WD40_repeat_dom_sf IPR037379, WDR74/Nsa1 |
PANTHERi | PTHR16038, PTHR16038, 1 hit |
Pfami | View protein in Pfam PF00400, WD40, 1 hit |
SMARTi | View protein in SMART SM00320, WD40, 4 hits |
SUPFAMi | SSF50978, SSF50978, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
D3ZMQ7-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAATSARWNH VWVGTETGIL KGVNLQRKLA ANFTPSGQPR REEAVNALCW
60 70 80 90 100
GTGGETQILV GCADRTVRHF NAEEGTFQSQ RYCPGGEGTF RGLAQADDGT
110 120 130 140 150
LITCVDSGIL RVWCENDKEA SSDPLLELKV GPGVCRMRQD PTHTHVVATC
160 170 180 190 200
GKENALKVWD LQGSEEPVFR AKNVRNDWLD LRVPIWDQDI QFLPGSQKLV
210 220 230 240 250
TCTGYHQVRI YDPASPQRRP VLEATYGEYP LTAMTLTPEG NSVIVGNTHG
260 270 280 290 300
QLAEIDFRQG RLLGCLKGLA GSVRGLQCHP SKPLLASCGL DRVLRIHRIR
310 320 330 340 350
NPRGLEHKDE PQEPQEPNLV PPEDTETDEL WASLEAAAKR KLPDLDQKQG
360
ALQRRKKKKR PGSTSP
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketB0BNI2 | B0BNI2_RAT | RCG47471, isoform CRA_a | Wdr74 rCG_47471 | 385 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC099294 Genomic DNA No translation available. CH473953 Genomic DNA Translation: EDM12712.1 |
RefSeqi | NP_001103039.1, NM_001109569.1 |
Genome annotation databases
Ensembli | ENSRNOT00000066823; ENSRNOP00000060344; ENSRNOG00000042878 |
GeneIDi | 690229 |
KEGGi | rno:690229 |
UCSCi | RGD:1582881, rat |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC099294 Genomic DNA No translation available. CH473953 Genomic DNA Translation: EDM12712.1 |
RefSeqi | NP_001103039.1, NM_001109569.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 10116.ENSRNOP00000060344 |
Genome annotation databases
Ensembli | ENSRNOT00000066823; ENSRNOP00000060344; ENSRNOG00000042878 |
GeneIDi | 690229 |
KEGGi | rno:690229 |
UCSCi | RGD:1582881, rat |
Organism-specific databases
CTDi | 54663 |
RGDi | 1582881, Wdr74 |
Phylogenomic databases
eggNOGi | KOG3881, Eukaryota |
GeneTreei | ENSGT00390000015119 |
Gene expression databases
Bgeei | ENSRNOG00000042878, Expressed in testis and 22 other tissues |
ExpressionAtlasi | D3ZMQ7, baseline and differential |
Family and domain databases
Gene3Di | 2.130.10.10, 2 hits |
InterProi | View protein in InterPro IPR015943, WD40/YVTN_repeat-like_dom_sf IPR001680, WD40_repeat IPR036322, WD40_repeat_dom_sf IPR037379, WDR74/Nsa1 |
PANTHERi | PTHR16038, PTHR16038, 1 hit |
Pfami | View protein in Pfam PF00400, WD40, 1 hit |
SMARTi | View protein in SMART SM00320, WD40, 4 hits |
SUPFAMi | SSF50978, SSF50978, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | D3ZMQ7_RAT | |
Accessioni | D3ZMQ7Primary (citable) accession number: D3ZMQ7 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | April 20, 2010 |
Last sequence update: | April 20, 2010 | |
Last modified: | February 10, 2021 | |
This is version 80 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |