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Protein
Submitted name:

PDZ domain-containing 4

Gene

Pdzd4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • ubiquitin protein ligase activity Source: GO_Central

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
PDZ domain-containing 4Imported
Gene namesi
Name:Pdzd4Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi1561214 Pdzd4

PTM / Processingi

Proteomic databases

PaxDbiD3ZLI9
PRIDEiD3ZLI9

PTM databases

iPTMnetiD3ZLI9
PhosphoSitePlusiD3ZLI9

Expressioni

Gene expression databases

BgeeiENSRNOG00000056174 Expressed in 10 organ(s), highest expression level in brain

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000053214

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini130 – 215PDZInterPro annotationAdd BLAST86

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili391 – 418Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410KDMK Eukaryota
ENOG4111F01 LUCA
GeneTreeiENSGT00510000046421
KOiK15682
OMAiAEFMEGS
OrthoDBiEOG091G0GKE

Family and domain databases

InterProiView protein in InterPro
IPR001478 PDZ
IPR036034 PDZ_sf
PfamiView protein in Pfam
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00228 PDZ, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS50106 PDZ, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZLI9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGCNMCVVQK PEEQYKVMLQ VNGKELSKLS QEQTLEALRA SKEPLVIQVL
60 70 80 90 100
RRSPRLRGDS SCHDLQLVDS GTQTDITFEH IMALGKLRPP TPPMGILEPP
110 120 130 140 150
PISHEYYDPA EFMEGGPQEA ERMDELEYEE VELCKNSHQD KLGLMVCYRT
160 170 180 190 200
DDEEDLGIYV GEVNPNSIAA KDGRIREGDR IIQINGMDVQ NREEAVAILS
210 220 230 240 250
QEENTNISLL VARPESQLAK RWKDSDRDDF LDDFGSENEG DLRTRKLKSP
260 270 280 290 300
PVQQTGNDEK GAPDGGPGLS NSQDLDSGVG RTDESTRNEE SSEHDLLGDE
310 320 330 340 350
PPSTTNTPGS LRKFGLQGDA LQSRDFHFSM DSLLAEGAGL GGADLPGLTD
360 370 380 390 400
EEYERYRELL EIKCHLENGN QLGILFSRAS SGNSALDVNR NESLGHEMAM
410 420 430 440 450
LEEELRHLEF KCRNILRAQK MQQLRERCMK AWLLEEESLY DLAASEPKKH
460 470 480 490 500
ELSDISELPE KSDKDSTSAY NTGESCRSTP LLVEPLPESP LKRSAAGNSN
510 520 530 540 550
LNRTPSGPPV TTHLKAAPSP GSPAKFRSLS RDPEVGRRQH TEERVRRSTK
560 570 580 590 600
TSVTLERVGP EGSPYLSRRH RGQEIEQYHS CVQLAPPRTL EDLSHGSLSL
610 620 630 640 650
ASGSRVGGVV AAAVEAPRME WKVKVRSDGT RYVAKRPVRD RLLKARALKI
660 670 680 690 700
REERSGMTTD DDAVSEMKMG RYWSKEERKQ HLIRAREQRK RREFMMQSRL
710 720 730 740 750
ECLREQQNGD SKPELNIIAL SHRKTMKKRN KKILDNWITI QEMLAHGARS
760
ADGKRIYNPL LSVTTV
Length:766
Mass (Da):86,133
Last modified:April 3, 2013 - v2
Checksum:i1A1E4F741F3F2B5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC096338 Genomic DNA No translation available.
RefSeqiNP_001129308.1, NM_001135836.1
UniGeneiRn.28086

Genome annotation databases

EnsembliENSRNOT00000077109; ENSRNOP00000072313; ENSRNOG00000056174
GeneIDi293856
KEGGirno:293856

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC096338 Genomic DNA No translation available.
RefSeqiNP_001129308.1, NM_001135836.1
UniGeneiRn.28086

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000053214

PTM databases

iPTMnetiD3ZLI9
PhosphoSitePlusiD3ZLI9

Proteomic databases

PaxDbiD3ZLI9
PRIDEiD3ZLI9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000077109; ENSRNOP00000072313; ENSRNOG00000056174
GeneIDi293856
KEGGirno:293856

Organism-specific databases

CTDi57595
RGDi1561214 Pdzd4

Phylogenomic databases

eggNOGiENOG410KDMK Eukaryota
ENOG4111F01 LUCA
GeneTreeiENSGT00510000046421
KOiK15682
OMAiAEFMEGS
OrthoDBiEOG091G0GKE

Gene expression databases

BgeeiENSRNOG00000056174 Expressed in 10 organ(s), highest expression level in brain

Family and domain databases

InterProiView protein in InterPro
IPR001478 PDZ
IPR036034 PDZ_sf
PfamiView protein in Pfam
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00228 PDZ, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS50106 PDZ, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZLI9_RAT
AccessioniPrimary (citable) accession number: D3ZLI9
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: November 7, 2018
This is version 55 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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