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Protein
Submitted name:

Zinc finger CCCH type-containing 3

Gene

Zc3h3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri663 – 691C3H1-typePROSITE-ProRule annotationAdd BLAST29
Zinc fingeri695 – 718C3H1-typePROSITE-ProRule annotationAdd BLAST24
Zinc fingeri719 – 745C3H1-typePROSITE-ProRule annotationAdd BLAST27
Zinc fingeri746 – 773C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri774 – 796C3H1-typePROSITE-ProRule annotationAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Zinc finger CCCH type-containing 3Imported
Gene namesi
Name:Zc3h3Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1307276 Zc3h3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiD3ZKY5

PTM databases

iPTMnetiD3ZKY5
PhosphoSitePlusiD3ZKY5

Expressioni

Gene expression databases

BgeeiENSRNOG00000007684 Expressed in 9 organ(s), highest expression level in testis
GenevisibleiD3ZKY5 RN

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000010120

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini663 – 691C3H1-typeInterPro annotationAdd BLAST29
Domaini695 – 718C3H1-typeInterPro annotationAdd BLAST24
Domaini719 – 745C3H1-typeInterPro annotationAdd BLAST27
Domaini746 – 773C3H1-typeInterPro annotationAdd BLAST28
Domaini774 – 796C3H1-typeInterPro annotationAdd BLAST23

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili4 – 24Sequence analysisAdd BLAST21

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri663 – 691C3H1-typePROSITE-ProRule annotationAdd BLAST29
Zinc fingeri695 – 718C3H1-typePROSITE-ProRule annotationAdd BLAST24
Zinc fingeri719 – 745C3H1-typePROSITE-ProRule annotationAdd BLAST27
Zinc fingeri746 – 773C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri774 – 796C3H1-typePROSITE-ProRule annotationAdd BLAST23

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1492 Eukaryota
COG5084 LUCA
GeneTreeiENSGT00390000009627
InParanoidiD3ZKY5
OMAiGRCNRGE
OrthoDBiEOG091G038R
PhylomeDBiD3ZKY5
TreeFamiTF324375

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 1 hit
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits

Sequencei

Sequence statusi: Complete.

D3ZKY5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEEKEQLRRQ IRLLQGLIDD YKTLHGNGPA HGSSSATRWQ PPVFQGGRTF
60 70 80 90 100
GSRYSRPNRR GFSSHHGPSW RKKYSLVNQP LESSDPASDH ALQASLREDS
110 120 130 140 150
QHPEPQPYVL ERQVQLSPDQ NMVIKIKPPS KTGSINVSGV QRGSLEDCDD
160 170 180 190 200
PSWSDQRPQG SEVEVPGGQL QPPRPGRTKM GYSVDDPLLV CQKEPGKPRV
210 220 230 240 250
VKSVGRINDS SPEHRRTVSE SEIAIKAHFP SSVLPQRTGV ALGRKVGLHS
260 270 280 290 300
TSYSEQFIGD QKANIGHADR LASLGSVVAP VRPATGTRQV REASLLVSCR
310 320 330 340 350
TSKFRKNNYK WVAASQKSPR VTRRALSPRT TLESVNKAAF GMGVKTEKSQ
360 370 380 390 400
HKVDPGARPE KLATPAKAGA SPSKYKWKAS SPSASSSSSF RWQSEAGSKD
410 420 430 440 450
HTSQLSPVLS RPPSGDRPAG VPSNSKPLFG ESQLSAYKVK SRTKIIRRRG
460 470 480 490 500
NTSLPGDKKI SPSAATTNKN HLTQRRRQAL RGKSSPILRK TPQKGLMQVN
510 520 530 540 550
RHRLCCVPSS RTHLSSKEAS NAHIRIPPSN KVIKTRYRIV KKTPSSSFGA
560 570 580 590 600
PSFPSSIPSW RARRISLSRS LVLNRLRPTI TGGGKAPPGS PRWRNKGYRC
610 620 630 640 650
IGGVLYKVSA NKLSKTSSRP SDSNRALLRT GRLDPATTSS RSLASRAIQR
660 670 680 690 700
SLAIIRQAKQ KKEKKREYCM YYNRFGRCNR GECCPYIHDP EKVAVCTRFV
710 720 730 740 750
RGTCKKTDGS CPFSHHVSKE KMPVCSYFLK GICSNSNCPY SHVYVSRKAE
760 770 780 790 800
VCGDFLKGYC PLGAKCKKKH TLLCPDFARR GVCPRGTQCQ LLHRNQKRHG
810 820 830 840 850
RRTAAPPIPG PSDGTPRSKA SAGHALRKPT TTPRPARQMS SGLASRTEAP
860 870 880 890 900
ASPPPSPRVL ASTSTLSSKA TAASSPSSSP STGSSTPSLD QEEAVSGTGG
910 920 930 940 950
AGSGTGSGSL CKLPSFISLH SSPSPGGQTG PQAPRSPRPK DSGKPLHIKP

RL
Length:952
Mass (Da):103,515
Last modified:April 20, 2010 - v1
Checksum:i772211C6494270A6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC133673 Genomic DNA No translation available.
RefSeqiNP_001128337.1, NM_001134865.1
UniGeneiRn.198237

Genome annotation databases

EnsembliENSRNOT00000010120; ENSRNOP00000010120; ENSRNOG00000007684
GeneIDi300032
KEGGirno:300032
UCSCiRGD:1307276 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC133673 Genomic DNA No translation available.
RefSeqiNP_001128337.1, NM_001134865.1
UniGeneiRn.198237

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000010120

PTM databases

iPTMnetiD3ZKY5
PhosphoSitePlusiD3ZKY5

Proteomic databases

PaxDbiD3ZKY5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000010120; ENSRNOP00000010120; ENSRNOG00000007684
GeneIDi300032
KEGGirno:300032
UCSCiRGD:1307276 rat

Organism-specific databases

CTDi23144
RGDi1307276 Zc3h3

Phylogenomic databases

eggNOGiKOG1492 Eukaryota
COG5084 LUCA
GeneTreeiENSGT00390000009627
InParanoidiD3ZKY5
OMAiGRCNRGE
OrthoDBiEOG091G038R
PhylomeDBiD3ZKY5
TreeFamiTF324375

Gene expression databases

BgeeiENSRNOG00000007684 Expressed in 9 organ(s), highest expression level in testis
GenevisibleiD3ZKY5 RN

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 1 hit
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZKY5_RAT
AccessioniPrimary (citable) accession number: D3ZKY5
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 12, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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