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Protein
Submitted name:

Trinucleotide repeat-containing 18

Gene

Tnrc18

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
Trinucleotide repeat-containing 18Imported
Gene namesi
Name:Tnrc18Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 12

Organism-specific databases

RGDi1307540 Tnrc18

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiD3ZKV7
PeptideAtlasiD3ZKV7
PRIDEiD3ZKV7

Expressioni

Gene expression databases

BgeeiENSRNOG00000024482 Expressed in 9 organ(s), highest expression level in testis
ExpressionAtlasiD3ZKV7 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000034125

Structurei

3D structure databases

ProteinModelPortaliD3ZKV7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2749 – 2894BAHInterPro annotationAdd BLAST146

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili845 – 872Sequence analysisAdd BLAST28
Coiled coili1418 – 1438Sequence analysisAdd BLAST21
Coiled coili1755 – 1775Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1886 Eukaryota
ENOG410XQP1 LUCA
GeneTreeiENSGT00530000063602
InParanoidiD3ZKV7
OrthoDBiEOG091G0071

Family and domain databases

InterProiView protein in InterPro
IPR001025 BAH_dom
PfamiView protein in Pfam
PF01426 BAH, 1 hit
SMARTiView protein in SMART
SM00439 BAH, 1 hit
PROSITEiView protein in PROSITE
PS51038 BAH, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

D3ZKV7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDGRDFGPQR SVHGPPPPLL SGLAMDSHRV GAATAGRLPS SGLPGPPPPG
60 70 80 90 100
KYMAGLNLHP HPGFSHLPSG LYPSYLHLNH LEPPSSGSPL LSQLGQPSIF
110 120 130 140 150
DTQKDGFYLP APGTLHAHTP SSRTPSGHSS GGTAKGSSRE GTGKDRSSRG
160 170 180 190 200
GDPPPLFGKK DPRAREEVSG PRGVVDLTQE VRAEGRQDRG SSRLAERLSP
210 220 230 240 250
FLAEAKAKGA LQPSALSLCN GVVDAGLVAE LSRGGAKEVA RQEENARLLR
260 270 280 290 300
RAEALLPAAR PCGSPLPPPP PPLPPKGPPA PPSSTPAGVY TVFREPGREH
310 320 330 340 350
RVVAPTFVPS VEAFDERVGP IQIASQARDV RAREREPGRP GVLQGPPGSP
360 370 380 390 400
RLERPEVLRE KSSVIRSLKR PPPSDGPPAA RSSRSSPDAR AYLPPKELLK
410 420 430 440 450
PEADPRPCER APRGPSSSAA QQAAKLFGLE PSRPPGPEHK WKPFELGNFA
460 470 480 490 500
TTQMAVLAAQ HHHASRAEEE AAVATASKKA YLDPGGAMPR ASATCGRPGA
510 520 530 540 550
DLHSAAAHGP GEASAMQSLI KYSGSFAREA VAVRPGGCGK KSPFGGLGTM
560 570 580 590 600
KPEPIPTSAG PPRAQARLTH PGVPTAGGGR QLKRDPERPE SAKTFGREGS
610 620 630 640 650
GAQGEAEVRH PPVGIAVAVA RQKDSGSSSR LGPGLIDQER SLSLNNVKGH
660 670 680 690 700
GRTEDDCDRA RHREDRLLGT RLDRDQEKLL RESKELADLA RLHPTSCAPN
710 720 730 740 750
GLNPNLMVTG GPTLAGSGRW SADPAAHLAT HPWLPRSGST SMWLAGHPYG
760 770 780 790 800
LGPPSLHQGM APAFPPGLGG SLPSAYQFVR DPQSGQLVVI PSDHLPHFAE
810 820 830 840 850
LMERATVPPL WPALYPPGRS PLHHAQQLQL FSQQHFLRQQ ELLYLQQQAA
860 870 880 890 900
QALELQRSAQ LVQERLKAQE HRTEMEEKIT KRGLETTGKA GLSATGPGLL
910 920 930 940 950
PQKSAGLATG PTGTHGKAMS PPPSPRASPV TSLKAKVIQK VEDVSKPPAY
960 970 980 990 1000
TYPATPSSHP SSPPPASPPP TPGLTRKEEA PENVVEKKDL ELEKEAPSPF
1010 1020 1030 1040 1050
QALFTDIPPR YPFQALPPHY GRPYPFLLQP TAAADADGLA PDVPLPADGP
1060 1070 1080 1090 1100
ERLALSPEDK PICLSPSKIP EPPRDSQEEE RLADREVKAE IEDIEEGPTE
1110 1120 1130 1140 1150
LPRLESPLAL PVPETMVAVS PAGGCGGSPL EAQALSTAGP GCREPSEVSD
1160 1170 1180 1190 1200
FAQVAEPQIE LPSRTEPHMA ALELGTQLTP EPLVEAKEEP VEVPLDVPME
1210 1220 1230 1240 1250
EPVAETGPED SLPQPPLTEP PPSLELSDCD LPVPEGQCLN LEAQEAAPAP
1260 1270 1280 1290 1300
ASTYLEETHP ESLLPGLDDP LAGMNALAAA AELPQARPLP SLGTGVPGGE
1310 1320 1330 1340 1350
KLDTAPSLVL EHSFLQGITL LSEIAELELD RRGQEVPGPE PNLVVRPSLE
1360 1370 1380 1390 1400
SLLAASSHML KEVLESPLSD SLKNLRLPRE LNSNKKYSWM QKKEERMFAM
1410 1420 1430 1440 1450
KSSLEDMDAL ELDFRMRLAE VQRRYKEKQR ELVKLQRRRD SGDRHEDAHR
1460 1470 1480 1490 1500
SLTRRGPGRP RKRTHTPSAL SPPCKRGKSH SGSGKLSSKS LLTSDDYDLG
1510 1520 1530 1540 1550
AGIRKRHKGP EEEQEALVSM GKARSRNQSW DDHESSSDFM SQLKIKKKKM
1560 1570 1580 1590 1600
SSDQEQLASK LDRALSLTKQ DKLKSPFKFS DSPGGKWKTS GGCGRFLTQC
1610 1620 1630 1640 1650
DSLLGKDRKA LAKGLGLSLK PSREGKHKRA SKARKMEGGF KARGQPKSVH
1660 1670 1680 1690 1700
SPFASEVSSH SYNTDSDEDE DLLKNSWSAQ GPSSSKLTSS LLGMVAKNSK
1710 1720 1730 1740 1750
PATGPKLTKR GPSGPRTLKP KEATSRKQSF CLLLREAEAH SSFSDSSAED
1760 1770 1780 1790 1800
SFDQDDSSEE EEEELEEEEE DEEEEGIGSY RLGAGEQALS PSLEESGLGL
1810 1820 1830 1840 1850
LARFAASALP SPVVGPPLSV VQLEAEQKAR KKEERQSLMG TEFEYTDSES
1860 1870 1880 1890 1900
EVKVPKQSPA GLLRPKKGAG EPGQSLAAPV PGTRASGPTS PDKAKLASEK
1910 1920 1930 1940 1950
GRKARKIRGS KEPGFEAGPE ASDDDLWTRR RSERIFLHDA SAAVQAPSNA
1960 1970 1980 1990 2000
APATKPSRCG RGGAPSPRKD TGRAKDRKDP RKKKRGKEAG SAATLPSPRV
2010 2020 2030 2040 2050
STLPDSRAPH PGALATAKRS KAKARGKEAK KENRGKGGAV SKLMECMAAE
2060 2070 2080 2090 2100
EDFEPNQDSS FSEDEHLPRG GATERPLTPA PRSCIIDKEE LKDGLRVLIP
2110 2120 2130 2140 2150
MDDKLLYAGH VQTVHSPDIY RVVVEGERGN RPHIYCLEQL LQEAIIDVRP
2160 2170 2180 2190 2200
ASTRFLPQGT RIAAYWSQQY RCLYPGTVVR GLLDLEDDGD LITVEFDDGD
2210 2220 2230 2240 2250
TGRIPLSHIR LLPPDYKIQC AEPSPALLVP SAKRRSRKTS KDTGEGKEGA
2260 2270 2280 2290 2300
ATGPQEATGG KARGRGRKPS TKAKADRAVV LEEGAATNEL PSAPLALEPV
2310 2320 2330 2340 2350
STPNSKKSTP EPVDKRARAP KARSVSVQPS PGPPTFSSCP APEPFGELPT
2360 2370 2380 2390 2400
PATAPLVTMP VTMPATRPKP KKARATEGSG AKGPRRPGED DELLVKLDHE
2410 2420 2430 2440 2450
GVMSPKSKKA KEALLLREDP GPGAWPESTG LLSLGSYSPT VGSSEPKATW
2460 2470 2480 2490 2500
PKGLDGDLTQ EPGPGLPLED PGNSKSPDKA QAEQDGAEES ETTSSSSSSS
2510 2520 2530 2540 2550
SSSSSSSSSS SSSSSSSSGS ETEGEEDAEK NREDGRGAGG RTCSAASSRA
2560 2570 2580 2590 2600
SSPASSSSSS SSSSSSSSSS SSSSSSSSSS SSSSSSSSSS SSSSSSSSST
2610 2620 2630 2640 2650
TDEDSSCSSD DEAAPAPAAG PSTQPALPTK VSKPPSKARA SAHSPGKKAP
2660 2670 2680 2690 2700
PTXQPPPQPP PQPQQTLQPK TQTGAGAKSR PKKREGVXXX XXXELAKRQR
2710 2720 2730 2740 2750
LPSVENRPKI AAFLPARQLW KWFGKPTQRR GMKGKARKLF YKAIVRGKEM
2760 2770 2780 2790 2800
IRIGDCAVFL SAGRPNLPYI GRIQSMWESW GNNMVVRVKW FYHPEETSPG
2810 2820 2830 2840 2850
KQFHEGQHWD QKSGHNLPAA LRASSQRKDF MERALYQSSH VDENDVQTVS
2860 2870 2880 2890 2900
HKCLVVGLEQ YEQMLKTKKY QDSEGLYYLA GTYEPTTGMI FSTDGVPVLC
Length:2,900
Mass (Da):309,754
Last modified:July 22, 2015 - v3
Checksum:i27BEB06B0314F296
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0G2K2C6A0A0G2K2C6_RAT
Trinucleotide repeat-containing 18
Tnrc18
2,662Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07035412 Genomic DNA No translation available.
AABR07035413 Genomic DNA No translation available.
AABR07035414 Genomic DNA No translation available.
AABR07035415 Genomic DNA No translation available.
AABR07035416 Genomic DNA No translation available.
AABR07035417 Genomic DNA No translation available.
AABR07035418 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSRNOT00000038203; ENSRNOP00000034125; ENSRNOG00000024482

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07035412 Genomic DNA No translation available.
AABR07035413 Genomic DNA No translation available.
AABR07035414 Genomic DNA No translation available.
AABR07035415 Genomic DNA No translation available.
AABR07035416 Genomic DNA No translation available.
AABR07035417 Genomic DNA No translation available.
AABR07035418 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliD3ZKV7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000034125

Proteomic databases

PaxDbiD3ZKV7
PeptideAtlasiD3ZKV7
PRIDEiD3ZKV7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000038203; ENSRNOP00000034125; ENSRNOG00000024482

Organism-specific databases

RGDi1307540 Tnrc18

Phylogenomic databases

eggNOGiKOG1886 Eukaryota
ENOG410XQP1 LUCA
GeneTreeiENSGT00530000063602
InParanoidiD3ZKV7
OrthoDBiEOG091G0071

Gene expression databases

BgeeiENSRNOG00000024482 Expressed in 9 organ(s), highest expression level in testis
ExpressionAtlasiD3ZKV7 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR001025 BAH_dom
PfamiView protein in Pfam
PF01426 BAH, 1 hit
SMARTiView protein in SMART
SM00439 BAH, 1 hit
PROSITEiView protein in PROSITE
PS51038 BAH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZKV7_RAT
AccessioniPrimary (citable) accession number: D3ZKV7
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: July 22, 2015
Last modified: November 7, 2018
This is version 55 of the entry and version 3 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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