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Protein
Submitted name:

Transcription factor AP-4

Gene

Tfap4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor AP-4Imported
Submitted name:
Transcription factor AP4 (Predicted)Imported
Gene namesi
Name:Tfap4Imported
Synonyms:Tcfap4_predictedImported
ORF Names:rCG_49828Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1308357 Tfap4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD3ZJT6

Expressioni

Gene expression databases

BgeeiENSRNOG00000005227 Expressed in 9 organ(s), highest expression level in colon

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000006979

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini48 – 99BHLHInterPro annotationAdd BLAST52

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili99 – 119Sequence analysisAdd BLAST21
Coiled coili148 – 182Sequence analysisAdd BLAST35
Coiled coili197 – 217Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0561 Eukaryota
ENOG4111JPE LUCA
GeneTreeiENSGT00390000015189
KOiK09108
OMAiHHVNVVT
OrthoDBiEOG091G194I
TreeFamiTF316489

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZJT6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEYFMVPTQK VPSLQHFRKT EKEVIGGLCS LANIPLTPET QRDQERRIRR
60 70 80 90 100
EIANSNERRR MQSINAGFQS LKTLIPHTDG EKLSKAAILQ QTAEYIFSLE
110 120 130 140 150
QEKTRLLQQN TQLKRFIQEL SGSSPKRRRA EDKDEGIGSP DIWEDEKAED
160 170 180 190 200
LRREMIELRQ QLDKERSVRM MLEEQVRSLE AHMYPEKLKV IAQQVQLQQQ
210 220 230 240 250
QEQVRLLHQE KLEREQQHLR TQLLPPPAPT HHPTVIVPAP APPSSHHINV
260 270 280 290 300
VTMGPSSVIN SVSTSRQNLD TIVQAIQHIE GTQDRQELEE EQRRAVIVKS
310 320 330
VRSCPEAHTS DTASDSEASD SDAMDQSREE PLGDGELP
Length:338
Mass (Da):38,769
Last modified:April 20, 2010 - v1
Checksum:i457D36FFBD2B4F2D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07029167 Genomic DNA No translation available.
AABR07029168 Genomic DNA No translation available.
CH474017 Genomic DNA Translation: EDL96299.1
RefSeqiNP_001101737.1, NM_001108267.1
UniGeneiRn.145139

Genome annotation databases

EnsembliENSRNOT00000006979; ENSRNOP00000006979; ENSRNOG00000005227
GeneIDi360482
KEGGirno:360482
UCSCiRGD:1308357 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07029167 Genomic DNA No translation available.
AABR07029168 Genomic DNA No translation available.
CH474017 Genomic DNA Translation: EDL96299.1
RefSeqiNP_001101737.1, NM_001108267.1
UniGeneiRn.145139

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000006979

Proteomic databases

PRIDEiD3ZJT6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000006979; ENSRNOP00000006979; ENSRNOG00000005227
GeneIDi360482
KEGGirno:360482
UCSCiRGD:1308357 rat

Organism-specific databases

CTDi7023
RGDi1308357 Tfap4

Phylogenomic databases

eggNOGiKOG0561 Eukaryota
ENOG4111JPE LUCA
GeneTreeiENSGT00390000015189
KOiK09108
OMAiHHVNVVT
OrthoDBiEOG091G194I
TreeFamiTF316489

Gene expression databases

BgeeiENSRNOG00000005227 Expressed in 9 organ(s), highest expression level in colon

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZJT6_RAT
AccessioniPrimary (citable) accession number: D3ZJT6
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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