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Protein
Submitted name:

Neuronal PAS domain protein 1

Gene

Npas1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Neuronal PAS domain protein 1Imported
Submitted name:
Neuronal PAS domain protein 1 (Predicted)Imported
Gene namesi
Name:Npas1Imported
Synonyms:Npas1_predictedImported
ORF Names:rCG_54271Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi1310040 Npas1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PRIDEiD3ZJ66

Expressioni

Gene expression databases

BgeeiENSRNOG00000015376 Expressed in 9 organ(s), highest expression level in brain

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000020855

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 98BHLHInterPro annotationAdd BLAST54
Domaini141 – 207PASInterPro annotationAdd BLAST67

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG3558 Eukaryota
ENOG410YK57 LUCA
GeneTreeiENSGT00760000118788
KOiK09098
OMAiVPWDFLP
OrthoDBiEOG091G02J4
TreeFamiTF317772

Family and domain databases

CDDicd00083 HLH, 1 hit
cd00130 PAS, 2 hits
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR000014 PAS
IPR035965 PAS-like_dom_sf
IPR013767 PAS_fold
IPR013655 PAS_fold_3
PfamiView protein in Pfam
PF00010 HLH, 1 hit
PF00989 PAS, 1 hit
PF08447 PAS_3, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SM00091 PAS, 2 hits
SUPFAMiSSF47459 SSF47459, 1 hit
SSF55785 SSF55785, 2 hits
TIGRFAMsiTIGR00229 sensory_box, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
PS50112 PAS, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZJ66-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATPYPRSGG RGEVKCGGGR GAGVPWDFLP GLMVKAPPGP CLQAQRKEKS
60 70 80 90 100
RNAARWRRGK ENLEFFELAK LLPLPGAISS QLDKASIVRL SVTYLRLRRF
110 120 130 140 150
AALGAPPWGL RAVGPPAGLA PGRRGAVALV SEVFEQHLGG HILQSLDGFV
160 170 180 190 200
FALNQEGKFL YISETVSIYL GLSQVELTGS SVFDYIHPGD HSEVLEQLGL
210 220 230 240 250
RAATTGPPTP PSVSSTSSSS SSSSLVDTPE IEASPTEASP AFRVQERSFF
260 270 280 290 300
VRMKSTLTKR GLNVKASGYK VIHVTGRLRA RALGLVALGH TLPPAPLAEL
310 320 330 340 350
PLHGHMIVFR LSLGLTILAC ESRVSDHMDM GPSELVGRSC YQFVHGQDVT
360 370 380 390 400
RIRQSHLDLL DKGQVVTGYY RWLQRAGGFV WLQSVATVAG NGKSAGEHHV
410 420 430 440 450
LWVSHVLSHA EGGQTPLDAF QLPAIVSQEE SSSPGPEPTK EEPPVERKQT
460 470 480 490 500
VPVEQDKDKD PQARGKRIKV EASPKEVRGS EDSGEEEVSD PPAPPRPEFT
510 520 530 540 550
SVIRAGALKH DPVLPWGLTT PGDPSPALLH AGFLPPVVRG LCTPGTIRYG
560 570 580 590
PAELSLMYPH LHRLGPGPSL PEAFYPTLGL PYPGPTGTRV QRKGD
Length:595
Mass (Da):63,978
Last modified:April 20, 2010 - v1
Checksum:iAE5634DEFDA2CA14
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07002646 Genomic DNA No translation available.
AABR07002647 Genomic DNA No translation available.
CH473979 Genomic DNA Translation: EDM08319.1
RefSeqiNP_001100949.1, NM_001107479.1
XP_006228475.1, XM_006228413.2
UniGeneiRn.211375

Genome annotation databases

EnsembliENSRNOT00000020855; ENSRNOP00000020855; ENSRNOG00000015376
GeneIDi308387
KEGGirno:308387
UCSCiRGD:1310040 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07002646 Genomic DNA No translation available.
AABR07002647 Genomic DNA No translation available.
CH473979 Genomic DNA Translation: EDM08319.1
RefSeqiNP_001100949.1, NM_001107479.1
XP_006228475.1, XM_006228413.2
UniGeneiRn.211375

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000020855

Proteomic databases

PRIDEiD3ZJ66

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000020855; ENSRNOP00000020855; ENSRNOG00000015376
GeneIDi308387
KEGGirno:308387
UCSCiRGD:1310040 rat

Organism-specific databases

CTDi4861
RGDi1310040 Npas1

Phylogenomic databases

eggNOGiKOG3558 Eukaryota
ENOG410YK57 LUCA
GeneTreeiENSGT00760000118788
KOiK09098
OMAiVPWDFLP
OrthoDBiEOG091G02J4
TreeFamiTF317772

Gene expression databases

BgeeiENSRNOG00000015376 Expressed in 9 organ(s), highest expression level in brain

Family and domain databases

CDDicd00083 HLH, 1 hit
cd00130 PAS, 2 hits
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR000014 PAS
IPR035965 PAS-like_dom_sf
IPR013767 PAS_fold
IPR013655 PAS_fold_3
PfamiView protein in Pfam
PF00010 HLH, 1 hit
PF00989 PAS, 1 hit
PF08447 PAS_3, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SM00091 PAS, 2 hits
SUPFAMiSSF47459 SSF47459, 1 hit
SSF55785 SSF55785, 2 hits
TIGRFAMsiTIGR00229 sensory_box, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
PS50112 PAS, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZJ66_RAT
AccessioniPrimary (citable) accession number: D3ZJ66
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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