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Protein
Submitted name:

Regulatory factor X, 5 (Influences HLA class II expression) (Predicted)

Gene

Rfx5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Regulatory factor X, 5 (Influences HLA class II expression) (Predicted)Imported
Submitted name:
Regulatory factor X5Imported
Gene namesi
Name:Rfx5Imported
Synonyms:Rfx5_predictedImported
ORF Names:rCG_51773Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1311677 Rfx5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD3ZHD7

Expressioni

Gene expression databases

BgeeiENSRNOG00000021012 Expressed in 9 organ(s), highest expression level in spleen

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000060480

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini91 – 167RFX-type winged-helixInterPro annotationAdd BLAST77

Phylogenomic databases

eggNOGiKOG3712 Eukaryota
ENOG410XSHE LUCA
GeneTreeiENSGT00550000074532
KOiK08061
OMAiTENREVG
OrthoDBiEOG091G0LV2
TreeFamiTF321340

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR003150 DNA-bd_RFX
IPR039779 RFX-like
IPR033486 RFX5
IPR029298 RFX5_C
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PANTHERiPTHR12619 PTHR12619, 1 hit
PTHR12619:SF18 PTHR12619:SF18, 1 hit
PfamiView protein in Pfam
PF14621 RFX5_DNA_bdg, 1 hit
PF02257 RFX_DNA_binding, 1 hit
SMARTiView protein in SMART
SM01306 RFX5_DNA_bdg, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS51526 RFX_DBD, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZHD7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAEDNPDAKS PKTGARPQGG AEAGEPTTLL QRLRGTISKA VQNKVEGILQ
60 70 80 90 100
EVQKFSDNDK LYLYLQLPSG PSTGDKSSEP SILSNEEYMY AYRWIRNHLE
110 120 130 140 150
EHMDTCLPKQ SVYDAYRKYC ESLACCRPLS TANFGKIIRE IFPDIKARRL
160 170 180 190 200
GGRGQSKYCY SGIRRKTLVS MPPLPGLDLK GSESPEMGPE VSPAPRDELV
210 220 230 240 250
EAACALTCDW AERILKRSFS SIVQVARYLL QQHLISARSA HAHVLKAGGL
260 270 280 290 300
AEEEERGPRE RSSCKSKNGV ENLEGGGPKK PERPAQPPKE LEARAGTDSP
310 320 330 340 350
GRSERKKSVI DSSVPAASKP QVNALVARLP VLLPRAPRSL ITPISGTLKV
360 370 380 390 400
ATLPLPTRVG GPQAAVPIIN MILPPVPTLS GPGPGPGLGP RFGPGPGSGS
410 420 430 440 450
GPGLGAGPGP GPGPGLGAGP GLGPGLGAGV GPGPGLGAGP GQRPGLRAGV
460 470 480 490 500
GPGPGLGAGL GLGPGRVPPR APILPRGTES REVGISGDPR PHDKGVKRTA
510 520 530 540 550
EVPLSEASGQ DPPVKEMKHE TEDTVSEAKR KRGRPRKKTG GSGERNATPE
560 570 580 590 600
KSAAAVNSPR SPRLLWETWG SKRENNLVGR PERPGAVGEA QRETVLAQGQ
610 620 630 640 650
EDGAVSKGEK SLSSQEAKEA EDKIPPVTSK VSVIKGRIQK EALQLVKGEA
660 670 680
DAATQGNKGL KGRVLQSSLT HEHKDPKATP P
Length:681
Mass (Da):71,535
Last modified:April 20, 2010 - v1
Checksum:iCA92393B16C1A883
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC130969 Genomic DNA No translation available.
CH474015 Genomic DNA Translation: EDL85766.1
RefSeqiNP_001101164.1, NM_001107694.1
XP_006232938.1, XM_006232876.3
XP_006232940.1, XM_006232878.3
XP_008759522.1, XM_008761300.2
UniGeneiRn.19941

Genome annotation databases

EnsembliENSRNOT00000068528; ENSRNOP00000060480; ENSRNOG00000021012
GeneIDi310659
KEGGirno:310659

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC130969 Genomic DNA No translation available.
CH474015 Genomic DNA Translation: EDL85766.1
RefSeqiNP_001101164.1, NM_001107694.1
XP_006232938.1, XM_006232876.3
XP_006232940.1, XM_006232878.3
XP_008759522.1, XM_008761300.2
UniGeneiRn.19941

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000060480

Proteomic databases

PRIDEiD3ZHD7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000068528; ENSRNOP00000060480; ENSRNOG00000021012
GeneIDi310659
KEGGirno:310659

Organism-specific databases

CTDi5993
RGDi1311677 Rfx5

Phylogenomic databases

eggNOGiKOG3712 Eukaryota
ENOG410XSHE LUCA
GeneTreeiENSGT00550000074532
KOiK08061
OMAiTENREVG
OrthoDBiEOG091G0LV2
TreeFamiTF321340

Gene expression databases

BgeeiENSRNOG00000021012 Expressed in 9 organ(s), highest expression level in spleen

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR003150 DNA-bd_RFX
IPR039779 RFX-like
IPR033486 RFX5
IPR029298 RFX5_C
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PANTHERiPTHR12619 PTHR12619, 1 hit
PTHR12619:SF18 PTHR12619:SF18, 1 hit
PfamiView protein in Pfam
PF14621 RFX5_DNA_bdg, 1 hit
PF02257 RFX_DNA_binding, 1 hit
SMARTiView protein in SMART
SM01306 RFX5_DNA_bdg, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS51526 RFX_DBD, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZHD7_RAT
AccessioniPrimary (citable) accession number: D3ZHD7
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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