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Protein
Submitted name:

Transcriptional repressor GATA-binding 1

Gene

Trps1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional repressor GATA-binding 1Imported
Submitted name:
Trichorhinophalangeal syndrome I (Predicted)Imported
Gene namesi
Name:Trps1Imported
Synonyms:Trps1_predictedImported
ORF Names:rCG_59789Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1311883 Trps1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD3ZEM6

Expressioni

Gene expression databases

BgeeiENSRNOG00000024998 Expressed in 8 organ(s), highest expression level in adult mammalian kidney

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000039913

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini692 – 720C2H2-typeInterPro annotationAdd BLAST29
Domaini890 – 948GATA-typeInterPro annotationAdd BLAST59

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1601 Eukaryota
COG5641 LUCA
GeneTreeiENSGT00760000119221
KOiK22040
OMAiNAGYDFT
OrthoDBiEOG091G00VI
TreeFamiTF350812

Family and domain databases

CDDicd00202 ZnF_GATA, 1 hit
Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR039355 Transcription_factor_GATA
IPR028440 TRPS1
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
IPR000679 Znf_GATA
IPR013088 Znf_NHR/GATA
PANTHERiPTHR10071 PTHR10071, 1 hit
PTHR10071:SF176 PTHR10071:SF176, 1 hit
PfamiView protein in Pfam
PF00320 GATA, 1 hit
PRINTSiPR00619 GATAZNFINGER
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 9 hits
SM00401 ZnF_GATA, 1 hit
SUPFAMiSSF57667 SSF57667, 1 hit
PROSITEiView protein in PROSITE
PS00344 GATA_ZN_FINGER_1, 1 hit
PS50114 GATA_ZN_FINGER_2, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 2 hits
PS50157 ZINC_FINGER_C2H2_2, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZEM6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVRKKNPPLR NVASEGEGQT LEPTATESKA SGKNKEFSAD QMSENTDQSD
60 70 80 90 100
VAELNTKEEH STHGQEPSSS SKKDLQISGL SEKAGFNYES PSKGGNLASF
110 120 130 140 150
PHDEVTDRNM LAFSSPAAGG VCEPLKSPQR AEADDPQDMA CTPSGDSLET
160 170 180 190 200
KEDHKMSPKA TEETGPVQSG QANCQGLSPV SVASKNPQVP SDGGVRLSKP
210 220 230 240 250
KSDLLVSDNP DPAPLSPELQ DFKCNICGYG YYGNDPTDLI KHFRKYHLGL
260 270 280 290 300
HNRTRQDAEL DSKILALHNM VQFSHSKDFQ KVNRSVLSGV LQDISSSRPA
310 320 330 340 350
LLNGTYDVQV TSGGTFIGIG RKTPDCQGNT KYFRCKFCNF TYMGNSSTEL
360 370 380 390 400
EQHFLQTHPN KIKVSLPSSE GVKASEKNSN KSIPALRASD SGDVGKWQDK
410 420 430 440 450
MTVKAGDDTP VGYSVPIKPL DSSRQNGTEA TSYYWCKFCS FSCESSSSLK
460 470 480 490 500
LLEHYGKQHG AVQSGGLNPE LNDKLPRGSV INQNDLAKSV EGEPLTKPEK
510 520 530 540 550
GLSGAKKKDF PSKGAEDNMV TSYNCQFCDF RYSKSHGPDV IVVGPLLRHY
560 570 580 590 600
QQLHNIHKCT IKHCPFCPRG LCSPEKHLGE ITYPFACRKS NCSHCALLLL
610 620 630 640 650
HLSPGVAGSS RVKHQCHQCS FSTPDVDVLL FHYETMHESQ ASDVKQEVNH
660 670 680 690 700
LLGSEGQQAA RDSKEHSCTK CDFITQVEEE ISRHYRRAHS CYKCRQCSFT
710 720 730 740 750
AGDTQSLLEH FNTVHCQEQE VATANGEEDG HAIPTIKEEP KIDLKVYSLL
760 770 780 790 800
NPDSKMGETV PESIVKREKL DDKEGLKDKI WTESSTDDLR GVTWRGADIL
810 820 830 840 850
RGSPSYTQAS LGLLTPVSSS QEQTKTLRDS PNVEAAHLAR PMYGLAVDTK
860 870 880 890 900
GFLQGAPAGG EKSASLTQQY PASGEGKTKD ESQSLLRRRR GSGVFCANCL
910 920 930 940 950
TTKTSLWRKN ANGGYVCNAC GLYQKLHSTP RPLNIIKQNN GEQIIRRRTR
960 970 980 990 1000
KRLNPEALQA EQLNKQQRGS GEEQVNGSPL ERRSEDHLSE SHQREIPLPS
1010 1020 1030 1040 1050
LSKYEAQGSL TKSHSAQQPV LVSQTLDIHK RMQPLHIQIK SPQESTGDPG
1060 1070 1080 1090 1100
NSSSVSDGKG SSERGSPIEK YMRPAKHPNY SPPGSPIEKY QYPLFGVPFV
1110 1120 1130 1140 1150
HNDFQSEADW LRFWSKYKLS VPGNPHYLSH VPGLPNPCQN YVPYPTFNLP
1160 1170 1180 1190 1200
PHFSAVGSDN DIPLDLAIKH SRPGPTANGA AKEKSKAPSN VKNEGPLNVV
1210 1220 1230 1240 1250
KTEKVDRSTQ DELSTKCVHC GIVFLDEVMY ALHMSCHGDS GPFQCSICQH
1260 1270 1280
LCTDKYDFTT HIQRGLHRNN AQAEKNGKPK E
Length:1,281
Mass (Da):141,015
Last modified:April 20, 2010 - v1
Checksum:iF1E78502D6E9C477
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07057841 Genomic DNA No translation available.
AABR07057842 Genomic DNA No translation available.
AABR07057843 Genomic DNA No translation available.
AABR07057844 Genomic DNA No translation available.
CH473950 Genomic DNA Translation: EDM16291.1
RefSeqiNP_001128309.1, NM_001134837.1
XP_017450233.1, XM_017594744.1
XP_017450235.1, XM_017594746.1
XP_017450236.1, XM_017594747.1
UniGeneiRn.229882

Genome annotation databases

EnsembliENSRNOT00000050774; ENSRNOP00000039913; ENSRNOG00000024998
GeneIDi299897
KEGGirno:299897

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07057841 Genomic DNA No translation available.
AABR07057842 Genomic DNA No translation available.
AABR07057843 Genomic DNA No translation available.
AABR07057844 Genomic DNA No translation available.
CH473950 Genomic DNA Translation: EDM16291.1
RefSeqiNP_001128309.1, NM_001134837.1
XP_017450233.1, XM_017594744.1
XP_017450235.1, XM_017594746.1
XP_017450236.1, XM_017594747.1
UniGeneiRn.229882

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000039913

Proteomic databases

PRIDEiD3ZEM6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000050774; ENSRNOP00000039913; ENSRNOG00000024998
GeneIDi299897
KEGGirno:299897

Organism-specific databases

CTDi7227
RGDi1311883 Trps1

Phylogenomic databases

eggNOGiKOG1601 Eukaryota
COG5641 LUCA
GeneTreeiENSGT00760000119221
KOiK22040
OMAiNAGYDFT
OrthoDBiEOG091G00VI
TreeFamiTF350812

Gene expression databases

BgeeiENSRNOG00000024998 Expressed in 8 organ(s), highest expression level in adult mammalian kidney

Family and domain databases

CDDicd00202 ZnF_GATA, 1 hit
Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR039355 Transcription_factor_GATA
IPR028440 TRPS1
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
IPR000679 Znf_GATA
IPR013088 Znf_NHR/GATA
PANTHERiPTHR10071 PTHR10071, 1 hit
PTHR10071:SF176 PTHR10071:SF176, 1 hit
PfamiView protein in Pfam
PF00320 GATA, 1 hit
PRINTSiPR00619 GATAZNFINGER
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 9 hits
SM00401 ZnF_GATA, 1 hit
SUPFAMiSSF57667 SSF57667, 1 hit
PROSITEiView protein in PROSITE
PS00344 GATA_ZN_FINGER_1, 1 hit
PS50114 GATA_ZN_FINGER_2, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 2 hits
PS50157 ZINC_FINGER_C2H2_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZEM6_RAT
AccessioniPrimary (citable) accession number: D3ZEM6
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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