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Protein
Submitted name:

Zinc finger with KRAB and SCAN domains 4

Gene

Zkscan4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Biological processTranscription, Transcription regulationSAAS annotation
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-RNO-212436 Generic Transcription Pathway

Names & Taxonomyi

Protein namesi
Submitted name:
Zinc finger with KRAB and SCAN domains 4Imported
Gene namesi
Name:Zkscan4Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 17

Organism-specific databases

RGDi1309004 Zkscan4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiD3ZCK0
PRIDEiD3ZCK0

Expressioni

Gene expression databases

BgeeiENSRNOG00000051823 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024797

Structurei

3D structure databases

ProteinModelPortaliD3ZCK0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 48SCAN boxInterPro annotationAdd BLAST48
Domaini168 – 195C2H2-typeInterPro annotationAdd BLAST28
Domaini196 – 223C2H2-typeInterPro annotationAdd BLAST28
Domaini224 – 251C2H2-typeInterPro annotationAdd BLAST28
Domaini252 – 279C2H2-typeInterPro annotationAdd BLAST28
Domaini280 – 307C2H2-typeInterPro annotationAdd BLAST28
Domaini335 – 362C2H2-typeInterPro annotationAdd BLAST28
Domaini363 – 390C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00760000118881
OMAiNRRHYCH
OrthoDBiEOG091G040B

Family and domain databases

Gene3Di1.10.4020.10, 1 hit
InterProiView protein in InterPro
IPR003309 SCAN_dom
IPR038269 SCAN_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF02023 SCAN, 1 hit
PF00096 zf-C2H2, 7 hits
SMARTiView protein in SMART
SM00431 SCAN, 1 hit
SM00355 ZnF_C2H2, 7 hits
SUPFAMiSSF57667 SSF57667, 4 hits
PROSITEiView protein in PROSITE
PS50804 SCAN_BOX, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 7 hits
PS50157 ZINC_FINGER_C2H2_2, 7 hits

Sequencei

Sequence statusi: Complete.

D3ZCK0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
SKEQILELLV LEQFLTILPG ELQAWVREQH PDSGEEVVAL LEYLDRQLDE
60 70 80 90 100
TPPQVPTGEW SRELLCCKVA LVTSSQDSQS SHSQAMKSLF KHESQESLEC
110 120 130 140 150
SPLQARGLEM KPETRGLPLA EEYKEQKPEQ TVWFLGEDTV QISTSTEASE
160 170 180 190 200
QEGKLQTTQK NATGNRRFYC HECGKSFAQS SGLTKHKRIH TGEKPYECED
210 220 230 240 250
CGKTFIGSSA LVIHQRVHTG EKPYECEECG KVFSHSSNLI KHQRTHTGEK
260 270 280 290 300
PYECDDCGKT FTQSCSLLEH HKIHTGEKPF QCNLCGKAFR RSSHLLRHQR
310 320 330 340 350
IHGDKAAPKL LHGETWEGQS RVASLGDIVE APETYQCNEC ERSFTRSRSL
360 370 380 390
IEHKKIHTGE KPYQCDACGK GFTRTSYLVQ HRRSHVGKKL SHSDL
Length:395
Mass (Da):44,802
Last modified:April 3, 2013 - v2
Checksum:i9614581BE7C720CB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07027815 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSRNOT00000084976; ENSRNOP00000073850; ENSRNOG00000051823
UCSCiRGD:1309004 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07027815 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliD3ZCK0
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024797

Proteomic databases

PaxDbiD3ZCK0
PRIDEiD3ZCK0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000084976; ENSRNOP00000073850; ENSRNOG00000051823
UCSCiRGD:1309004 rat

Organism-specific databases

RGDi1309004 Zkscan4

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00760000118881
OMAiNRRHYCH
OrthoDBiEOG091G040B

Enzyme and pathway databases

ReactomeiR-RNO-212436 Generic Transcription Pathway

Gene expression databases

BgeeiENSRNOG00000051823 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

Gene3Di1.10.4020.10, 1 hit
InterProiView protein in InterPro
IPR003309 SCAN_dom
IPR038269 SCAN_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF02023 SCAN, 1 hit
PF00096 zf-C2H2, 7 hits
SMARTiView protein in SMART
SM00431 SCAN, 1 hit
SM00355 ZnF_C2H2, 7 hits
SUPFAMiSSF57667 SSF57667, 4 hits
PROSITEiView protein in PROSITE
PS50804 SCAN_BOX, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 7 hits
PS50157 ZINC_FINGER_C2H2_2, 7 hits
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZCK0_RAT
AccessioniPrimary (citable) accession number: D3ZCK0
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: November 7, 2018
This is version 80 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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