Zkscan4

Functionⁱ

GO - Molecular functionⁱ

DNA-binding transcription factor activity Source: InterPro
metal ion binding Source: UniProtKB-KW
nucleic acid binding Source: InterPro

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Biological process	Transcription, Transcription regulationSAAS annotation
Ligand	Metal-binding, Zinc

Enzyme and pathway databases

Reactomeⁱ	R-RNO-212436 Generic Transcription Pathway

Reactomeⁱ

R-RNO-212436 Generic Transcription Pathway

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: Zinc finger with KRAB and SCAN domains 4Imported
Gene namesⁱ	Name:Zkscan4Imported
Organismⁱ	Rattus norvegicus (Rat)Imported
Taxonomic identifierⁱ	10116 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus
Proteomesⁱ	UP000002494 Componentⁱ: Chromosome 17

Organism-specific databases

Rat genome database More...RGDⁱ	1309004 Zkscan4

RGDⁱ

1309004 Zkscan4

Keywords - Cellular componentⁱ

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingⁱ

Proteomic databases

PaxDbⁱ	D3ZCK0
PRIDEⁱ	D3ZCK0

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSRNOG00000051823 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Bgeeⁱ

ENSRNOG00000051823 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000024797

STRINGⁱ

10116.ENSRNOP00000024797

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	D3ZCK0
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Length
Domainⁱ	1 – 48	SCAN boxInterPro annotationAdd BLAST	48
Domainⁱ	168 – 195	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	196 – 223	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	224 – 251	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	252 – 279	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	280 – 307	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	335 – 362	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	363 – 390	C2H2-typeInterPro annotationAdd BLAST	28

Keywords - Domainⁱ

RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGⁱ	KOG1721 Eukaryota COG5048 LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00760000118881
OMAⁱ	NRRHYCH
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G040B

Family and domain databases

Gene3Dⁱ	1.10.4020.10, 1 hit
InterProⁱ	View protein in InterPro IPR003309 SCAN_dom IPR038269 SCAN_sf IPR036236 Znf_C2H2_sf IPR013087 Znf_C2H2_type
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF02023 SCAN, 1 hit PF00096 zf-C2H2, 7 hits
SMARTⁱ	View protein in SMART SM00431 SCAN, 1 hit SM00355 ZnF_C2H2, 7 hits
SUPFAMⁱ	SSF57667 SSF57667, 4 hits
PROSITEⁱ	View protein in PROSITE PS50804 SCAN_BOX, 1 hit PS00028 ZINC_FINGER_C2H2_1, 7 hits PS50157 ZINC_FINGER_C2H2_2, 7 hits

Sequenceⁱ

Sequence statusⁱ: Complete.

D3ZCK0-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
SKEQILELLV LEQFLTILPG ELQAWVREQH PDSGEEVVAL LEYLDRQLDE 
        60         70         80         90        100
TPPQVPTGEW SRELLCCKVA LVTSSQDSQS SHSQAMKSLF KHESQESLEC 
       110        120        130        140        150
SPLQARGLEM KPETRGLPLA EEYKEQKPEQ TVWFLGEDTV QISTSTEASE 
       160        170        180        190        200
QEGKLQTTQK NATGNRRFYC HECGKSFAQS SGLTKHKRIH TGEKPYECED 
       210        220        230        240        250
CGKTFIGSSA LVIHQRVHTG EKPYECEECG KVFSHSSNLI KHQRTHTGEK 
       260        270        280        290        300
PYECDDCGKT FTQSCSLLEH HKIHTGEKPF QCNLCGKAFR RSSHLLRHQR 
       310        320        330        340        350
IHGDKAAPKL LHGETWEGQS RVASLGDIVE APETYQCNEC ERSFTRSRSL 
       360        370        380        390 
IEHKKIHTGE KPYQCDACGK GFTRTSYLVQ HRRSHVGKKL SHSDL

Length:395

Mass (Da):44,802

Last modified:April 3, 2013 - v2

Checksum:ⁱ9614581BE7C720CB

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AABR07027815 Genomic DNA No translation available.

Select the link destinations:
EMBLⁱ
GenBankⁱ
DDBJⁱ

Links Updated

AABR07027815 Genomic DNA No translation available.

Genome annotation databases

Ensemblⁱ	ENSRNOT00000084976; ENSRNOP00000073850; ENSRNOG00000051823
UCSC genome browser More...UCSCⁱ	RGD:1309004 rat

Similar proteinsⁱ

90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
D3ZCK0	MCG23028		MOUSE		480	UniRef90_Q5SZT6
UPI000A316D25		MUSCR		485
UPI000A306029		MUSPA		478
OTTMUSG00000000421 protein		MOUSE		477

Protein	Similar proteins		Species	Score	Length	Source
D3ZCK0	Uncharacterized protein		MACFA		569	UniRef50_A0A2K5VUX6
MCG23028		MOUSE		480
Uncharacterized protein		NEOLE		467
Zinc finger protein with KRAB and SCAN domains 4		PTEAL		322
Zinc finger protein with KRAB and SCAN domain 3		CRIGR		395
+36

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AABR07027815 Genomic DNA No translation available.

Select the link destinations:
EMBLⁱ
GenBankⁱ
DDBJⁱ

Links Updated

AABR07027815 Genomic DNA No translation available.

3D structure databases

ProteinModelPortalⁱ	D3ZCK0
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000024797

STRINGⁱ

10116.ENSRNOP00000024797

Proteomic databases

PaxDbⁱ	D3ZCK0
PRIDEⁱ	D3ZCK0

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSRNOT00000084976; ENSRNOP00000073850; ENSRNOG00000051823
UCSCⁱ	RGD:1309004 rat

Organism-specific databases

RGDⁱ	1309004 Zkscan4

Phylogenomic databases

eggNOGⁱ	KOG1721 Eukaryota COG5048 LUCA
GeneTreeⁱ	ENSGT00760000118881
OMAⁱ	NRRHYCH
OrthoDBⁱ	EOG091G040B

Enzyme and pathway databases

Reactomeⁱ	R-RNO-212436 Generic Transcription Pathway

Reactomeⁱ

R-RNO-212436 Generic Transcription Pathway

Gene expression databases

Bgeeⁱ	ENSRNOG00000051823 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Bgeeⁱ

ENSRNOG00000051823 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

Gene3Dⁱ	1.10.4020.10, 1 hit
InterProⁱ	View protein in InterPro IPR003309 SCAN_dom IPR038269 SCAN_sf IPR036236 Znf_C2H2_sf IPR013087 Znf_C2H2_type
Pfamⁱ	View protein in Pfam PF02023 SCAN, 1 hit PF00096 zf-C2H2, 7 hits
SMARTⁱ	View protein in SMART SM00431 SCAN, 1 hit SM00355 ZnF_C2H2, 7 hits
SUPFAMⁱ	SSF57667 SSF57667, 4 hits
PROSITEⁱ	View protein in PROSITE PS50804 SCAN_BOX, 1 hit PS00028 ZINC_FINGER_C2H2_1, 7 hits PS50157 ZINC_FINGER_C2H2_2, 7 hits
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	D3ZCK0_RAT
Accessionⁱ	D3ZCK0Primary (citable) accession number: D3ZCK0
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	April 20, 2010
	Last sequence update:	April 3, 2013
	Last modified:	November 7, 2018
	This is version 80 of the entry and version 2 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteomeImported

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - D3ZCK0 (D3ZCK0_RAT)

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Zinc finger with KRAB and SCAN domains 4

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Enzyme and pathway databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Nucleus

Nucleus

Keywords - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Keywords - Domaini

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

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Functionⁱ

GO - Molecular functionⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

PTM / Processingⁱ

Expressionⁱ

Interactionⁱ

Structureⁱ

Family & Domainsⁱ

Keywords - Domainⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ