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Entry version 96 (29 Sep 2021)
Sequence version 1 (20 Apr 2010)
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Protein

Phosphoinositide 5-phosphatase

Gene

Synj1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolaseARBA annotation, RNA-bindingPROSITE-ProRule annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Phosphoinositide 5-phosphataseARBA annotation (EC:3.1.3.36ARBA annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Synj1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 16

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1354961, Synj1

Eukaryotic Pathogen, Vector and Host Database Resources

More...
VEuPathDBi
HostDB:ENSMUSG00000022973

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Keywords - PTMi

PhosphoproteinARBA annotation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
D3Z656

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
D3Z656

MaxQB - The MaxQuant DataBase

More...
MaxQBi
D3Z656

PeptideAtlas

More...
PeptideAtlasi
D3Z656

PRoteomics IDEntifications database

More...
PRIDEi
D3Z656

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
353384

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
D3Z656

SwissPalm database of S-palmitoylation events

More...
SwissPalmi
D3Z656

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000022973, Expressed in brain and 284 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
D3Z656, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
D3Z656, MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
D3Z656

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini159 – 482SACInterPro annotationAdd BLAST324
Domaini934 – 1011RRMInterPro annotationAdd BLAST78

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 35DisorderedSequence analysisAdd BLAST35
Regioni1069 – 1360DisorderedSequence analysisAdd BLAST292
Regioni1396 – 1540DisorderedSequence analysisAdd BLAST145
Regioni1566 – 1607DisorderedSequence analysisAdd BLAST42

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1069 – 1099Polar residuesSequence analysisAdd BLAST31
Compositional biasi1120 – 1140Polar residuesSequence analysisAdd BLAST21
Compositional biasi1141 – 1171Pro residuesSequence analysisAdd BLAST31
Compositional biasi1253 – 1267Polar residuesSequence analysisAdd BLAST15
Compositional biasi1304 – 1329Pro residuesSequence analysisAdd BLAST26
Compositional biasi1330 – 1354Polar residuesSequence analysisAdd BLAST25
Compositional biasi1396 – 1412Polar residuesSequence analysisAdd BLAST17
Compositional biasi1421 – 1439Polar residuesSequence analysisAdd BLAST19
Compositional biasi1453 – 1473Polar residuesSequence analysisAdd BLAST21
Compositional biasi1488 – 1518Polar residuesSequence analysisAdd BLAST31
Compositional biasi1566 – 1583Pro residuesSequence analysisAdd BLAST18
Compositional biasi1584 – 1607Polar residuesSequence analysisAdd BLAST24

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the synaptojanin family.ARBA annotation
In the central section; belongs to the inositol 1,4,5-trisphosphate 5-phosphatase family.ARBA annotation

Phylogenomic databases

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000157964

Identification of Orthologs from Complete Genome Data

More...
OMAi
ELCTTNT

Database of Orthologous Groups

More...
OrthoDBi
359616at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
D3Z656

TreeFam database of animal gene trees

More...
TreeFami
TF354311

Family and domain databases

Conserved Domains Database

More...
CDDi
cd12719, RRM_SYNJ1, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.70.330, 1 hit
3.60.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR015047, DUF1866
IPR036691, Endo/exonu/phosph_ase_sf
IPR005135, Endo/exonuclease/phosphatase
IPR000300, IPPc
IPR012677, Nucleotide-bd_a/b_plait_sf
IPR035979, RBD_domain_sf
IPR000504, RRM_dom
IPR002013, SAC_dom
IPR034972, SYNJ1
IPR034971, SYNJ1_RRM

The PANTHER Classification System

More...
PANTHERi
PTHR11200:SF158, PTHR11200:SF158, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08952, DUF1866, 1 hit
PF03372, Exo_endo_phos, 1 hit
PF02383, Syja_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01165, DUF1866, 1 hit
SM00128, IPPc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF54928, SSF54928, 1 hit
SSF56219, SSF56219, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50102, RRM, 1 hit
PS50275, SAC, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 9 potential isoforms that are computationally mapped.Show allAlign All

D3Z656-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRKSWTCWSG SDASGGCSGG GCGRRRRRSR RKRAASEERR MAFSKGFRIY
60 70 80 90 100
HKLDPPPFSL IVETRHKEEC LMFESGAVAV LSSAEKEAIK GTYAKVLDAY
110 120 130 140 150
GLLGVLRLNL GDTMLHYLVL VTGCMSVGKI QESEVFRVTS TEFISLRVDA
160 170 180 190 200
SDEDRISEVR KVLNSGNFYF AWSASGVSLD LSLNAHRSMQ EHTTDNRFFW
210 220 230 240 250
NQSLHLHLKH YGVNCDDWLL RLMCGGVEIR TIYAAHKQAK ACLISRLSCE
260 270 280 290 300
RAGTRFNVRG TNDDGHVANF VETEQVIYLD DCVSSFIQIR GSVPLFWEQP
310 320 330 340 350
GLQVGSHRVR MSRGFEANAP AFDRHFRTLK DLYGKQIVVN LLGSKEGEHM
360 370 380 390 400
LSKAFQSHLK ASEHASDIHM VSFDYHQMVK GGKAEKLHSI LKPQVQKFLD
410 420 430 440 450
YGFFYFDGSE VQRCQSGTVR TNCLDCLDRT NSVQAFLGLE MLAKQLEALG
460 470 480 490 500
LAEKPQLVTR FQEVFRSMWS VNGDSISKIY AGTGALEGKA KLKDGARSVT
510 520 530 540 550
RTIQNNFFDS SKQEAIDVLL LGNTLNSDLA DKARALLTTG SLRVSEQTLQ
560 570 580 590 600
SASSKVLKNM CENFYKYSKP KKIRVCVGTW NVNGGKQFRS IAFKNQTLTD
610 620 630 640 650
WLLDAPKLAG IQEFQDKRSK PTDIFAIGFE EMVELNAGNI VNASTTNQKL
660 670 680 690 700
WAVELQKTIS RDNKYVLLAS EQLVGVCLFV FIRPQHAPFI RDVAVDTVKT
710 720 730 740 750
GMGGATGNKG AVAIRMLFHT TSLCFVCSHF AAGQSQVKER NEDFVEIARK
760 770 780 790 800
LSFPMGRMLF SHDYVFWCGD FNYRIDLPNE EVKELIRQQN WDSLIAGDQL
810 820 830 840 850
INQKNAGQIF RGFLEGKVTF APTYKYDLFS EDYDTSEKCR TPAWTDRVLW
860 870 880 890 900
RRRKWPFDRS AEDLDLLNAS FQDESKILYT WTPGTLLHYG RAELKTSDHR
910 920 930 940 950
PVVALIDIDI FEVEAEERQK IYKEVIAVQG PPDGTVLVSI KSSAQESTFF
960 970 980 990 1000
DDALIDELLR QFAHFGEVIL IRFVEDKMWV TFLEGSSALN ALSLNGKELL
1010 1020 1030 1040 1050
NRTITITLKS PDWIKHLEEE MSLEKISVTL PSSASSTLLG EDAEVAADFD
1060 1070 1080 1090 1100
MEGDVDDYSA EVEELLPQHL QPSSSSGLGT SPSSSPRTSP CQSPTVPEYS
1110 1120 1130 1140 1150
APSLPIRPSR APSRTPGPPS SQGSPVDTQP AAQKDSSQTL EPKRPPPPRP
1160 1170 1180 1190 1200
VAPPARPAPP QRPPPPSGAR SPAPARKEFG GVGAPPSPGV ARREIEAPKS
1210 1220 1230 1240 1250
PGTARKDNIG RNQPSPQAGL AGPGPAGYGA ARPTIPARAG VISAPQSQAR
1260 1270 1280 1290 1300
VCAGRPTPDS QSKPSETLKG PAVLPEPLKP QAAFPQQPSL PTPAQKLQDP
1310 1320 1330 1340 1350
LVPIAAPTMP PSGPQPNLET PPQPPPRSRS SQSLPSDSSP QLQVKINGIS
1360 1370 1380 1390 1400
GVKQEPTLKS DPFEDLSLSV LAVSKAQPSV QISPVLTPDP KMLIQLPSAS
1410 1420 1430 1440 1450
QSQVNPLSSV SCMPTRPPGP EESKSQESMG SSANPFPSLP CRNPFTDRTA
1460 1470 1480 1490 1500
APGNPFRVQS QESEATSWLS KEEPVPNSPF PPLMPLSHDT SKASSSLGGF
1510 1520 1530 1540 1550
EDNFDLQSQS TVKTSNPKGW VTFDEDDNFP TTGKSKSVCP DLVGNAPASF
1560 1570 1580 1590 1600
DDDWSKGASV SFCVLPARRP PPPPPPVPLL PPGTTSSAGP STTLPSKAPS

TLDFTER
Length:1,607
Mass (Da):176,333
Last modified:April 20, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i27C4E48E5E59E7F8
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 9 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q8CHC4SYNJ1_MOUSE
Synaptojanin-1
Synj1 Kiaa0910
1,574Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
E9Q7S0E9Q7S0_MOUSE
Phosphoinositide 5-phosphatase
Synj1
1,309Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F7BQW7F7BQW7_MOUSE
Phosphoinositide 5-phosphatase
Synj1
1,324Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
D3Z1M7D3Z1M7_MOUSE
Phosphoinositide 5-phosphatase
Synj1
693Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6VSS8F6VSS8_MOUSE
Synaptojanin-1
Synj1
200Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A338P6C7A0A338P6C7_MOUSE
Synaptojanin-1
Synj1
242Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A338P6V7A0A338P6V7_MOUSE
Synaptojanin-1
Synj1
88Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F7CD11F7CD11_MOUSE
Synaptojanin-1
Synj1
189Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6XIX0F6XIX0_MOUSE
Synaptojanin-1
Synj1
103Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

NCBI Reference Sequences

More...
RefSeqi
NP_001157955.1, NM_001164483.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000121759; ENSMUSP00000113308; ENSMUSG00000022973

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
104015

UCSC genome browser

More...
UCSCi
uc012aig.1, mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

RefSeqiNP_001157955.1, NM_001164483.1

3D structure databases

SMRiD3Z656
ModBaseiSearch...

PTM databases

iPTMnetiD3Z656
SwissPalmiD3Z656

Proteomic databases

EPDiD3Z656
jPOSTiD3Z656
MaxQBiD3Z656
PeptideAtlasiD3Z656
PRIDEiD3Z656
ProteomicsDBi353384

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...
Antibodypediai
2183, 155 antibodies

The DNASU plasmid repository

More...
DNASUi
104015

Genome annotation databases

EnsembliENSMUST00000121759; ENSMUSP00000113308; ENSMUSG00000022973
GeneIDi104015
UCSCiuc012aig.1, mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
8867
MGIiMGI:1354961, Synj1
VEuPathDBiHostDB:ENSMUSG00000022973

Phylogenomic databases

GeneTreeiENSGT00940000157964
OMAiELCTTNT
OrthoDBi359616at2759
PhylomeDBiD3Z656
TreeFamiTF354311

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...
BioGRID-ORCSi
104015, 0 hits in 65 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Synj1, mouse

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000022973, Expressed in brain and 284 other tissues
ExpressionAtlasiD3Z656, baseline and differential
GenevisibleiD3Z656, MM

Family and domain databases

CDDicd12719, RRM_SYNJ1, 1 hit
Gene3Di3.30.70.330, 1 hit
3.60.10.10, 1 hit
InterProiView protein in InterPro
IPR015047, DUF1866
IPR036691, Endo/exonu/phosph_ase_sf
IPR005135, Endo/exonuclease/phosphatase
IPR000300, IPPc
IPR012677, Nucleotide-bd_a/b_plait_sf
IPR035979, RBD_domain_sf
IPR000504, RRM_dom
IPR002013, SAC_dom
IPR034972, SYNJ1
IPR034971, SYNJ1_RRM
PANTHERiPTHR11200:SF158, PTHR11200:SF158, 1 hit
PfamiView protein in Pfam
PF08952, DUF1866, 1 hit
PF03372, Exo_endo_phos, 1 hit
PF02383, Syja_N, 1 hit
SMARTiView protein in SMART
SM01165, DUF1866, 1 hit
SM00128, IPPc, 1 hit
SUPFAMiSSF54928, SSF54928, 1 hit
SSF56219, SSF56219, 1 hit
PROSITEiView protein in PROSITE
PS50102, RRM, 1 hit
PS50275, SAC, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD3Z656_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D3Z656
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 29, 2021
This is version 96 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Proteomics identificationCombined sources, Reference proteomeImported
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