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Protein
Submitted name:

DNA-binding protein SMUBP-2

Gene

Ighmbp2

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
DNA-binding protein SMUBP-2Imported
Gene namesi
Name:Ighmbp2Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 19

Organism-specific databases

MGIiMGI:99954 Ighmbp2

PTM / Processingi

Proteomic databases

MaxQBiD3Z5P5
PeptideAtlasiD3Z5P5
PRIDEiD3Z5P5

Expressioni

Gene expression databases

BgeeiENSMUSG00000024831 Expressed in 123 organ(s), highest expression level in ear vesicle
ExpressionAtlasiD3Z5P5 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliD3Z5P5
SMRiD3Z5P5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini721 – 784R3HInterPro annotationAdd BLAST64

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili315 – 335Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1803 Eukaryota
COG1112 LUCA
GeneTreeiENSGT00930000151035
HOGENOMiHOG000185831
OMAiYCLSHHI

Family and domain databases

CDDicd02641 R3H_Smubp-2_like, 1 hit
Gene3Di3.30.1370.50, 1 hit
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR014001 Helicase_ATP-bd
IPR027417 P-loop_NTPase
IPR001374 R3H_dom
IPR036867 R3H_dom_sf
IPR034072 R3H_Smubp-2
IPR004483 SMUBP-2/Hcs1-like
PfamiView protein in Pfam
PF01424 R3H, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SM00487 DEXDc, 1 hit
SM00393 R3H, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
SSF82708 SSF82708, 1 hit
TIGRFAMsiTIGR00376 TIGR00376, 1 hit
PROSITEiView protein in PROSITE
PS51061 R3H, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

D3Z5P5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASSTVESFV AQQLQLLELE RDAEVEERRS WQEHSSLREL QSRGVCLLKL
60 70 80 90 100
QVSSQRTGLY GQRLVTFEPR KFGPAVVLPS NSFTSGDIVG LYDTNENSQL
110 120 130 140 150
ATGVLTRITQ KSVTVAFDES HDLQLNLDRE NTYRLLKLAN DVTYKRLKKA
160 170 180 190 200
LMTLKKYHSG PASSLIDILL GSSTPSPAME IPPLSFYNTT LDLSQKEAVS
210 220 230 240 250
FALAQKELAI IHGPPGTGKT TTVVEIILQA VKQGLKVLCC APSNIAVDNL
260 270 280 290 300
VERLALCKKR ILRLGHPARL LESVQHHSLD AVLARSDNAQ IVADIRRDID
310 320 330 340 350
QVFGKNKKTQ DKREKGNFRS EIKLLRKELK EREEAAIVQS LTAADVVLAT
360 370 380 390 400
NTGASSDGPL KLLPEDYFDV VVVDECAQAL EASCWIPLLK APKCILAGDH
410 420 430 440 450
RQLPPTTVSH RAALAGLSRS LMERLAEKHG AGVVRMLTVQ YRMHQAIMCW
460 470 480 490 500
ASEAMYHGQL TSHPSVAGHL LKDLPGVTDT EETRVPLLLI DTAGCGLLEL
510 520 530 540 550
EEEDSQSKGN PGEVRLVTLH IQALVDAGVQ AGDIAVIAPY NLQVDLLRQS
560 570 580 590 600
LSNKHPELEI KSVDGFQGRE KEAVLLTFVR SNRKGEVGFL AEDRRINVAV
610 620 630 640 650
TRARRHVAVI CDSHTVNNHA FLKTLVDYFT EHGEVRTAFE YLDDIVPENY
660 670 680 690 700
THEGSQGHSR VPKPKCPSTS IRKPASDQES GQETRAAPRH GRRKPSEKPP
710 720 730 740 750
GSHVQSQHSS SANGSDRTGG PDRTEHFRAT IEEFVASKES QLEFPTSLSS
760 770 780 790 800
HDRLRVHQLA EEFGLRHDST GEGKARHITV SRRSPASSGS VAPQPSSPPS
810 820 830 840 850
PAQAEPEPRA EEPVTVVQAH CPVQLDLKAL HLERLQRQQS SQAQTAKGQP
860 870 880
GGDSRPQKAS QKKKKKEPKD PRLWRKGSCP CPPED
Length:885
Mass (Da):97,498
Last modified:April 20, 2010 - v1
Checksum:iC6D830B4139C3E42
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
P40694SMBP2_MOUSE
DNA-binding protein SMUBP-2
Ighmbp2 Smbp-2, Smbp2
993Annotation score:
A0A0B4J1E3A0A0B4J1E3_MOUSE
DNA-binding protein SMUBP-2
Ighmbp2 mCG_3886
993Annotation score:
D6RFT3D6RFT3_MOUSE
DNA-binding protein SMUBP-2
Ighmbp2
253Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC148174 Genomic DNA No translation available.
AL626765 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSMUST00000119292; ENSMUSP00000113438; ENSMUSG00000024831
UCSCiuc008fwb.1 mouse

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC148174 Genomic DNA No translation available.
AL626765 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliD3Z5P5
SMRiD3Z5P5
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiD3Z5P5
PeptideAtlasiD3Z5P5
PRIDEiD3Z5P5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000119292; ENSMUSP00000113438; ENSMUSG00000024831
UCSCiuc008fwb.1 mouse

Organism-specific databases

MGIiMGI:99954 Ighmbp2

Phylogenomic databases

eggNOGiKOG1803 Eukaryota
COG1112 LUCA
GeneTreeiENSGT00930000151035
HOGENOMiHOG000185831
OMAiYCLSHHI

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000024831 Expressed in 123 organ(s), highest expression level in ear vesicle
ExpressionAtlasiD3Z5P5 baseline and differential

Family and domain databases

CDDicd02641 R3H_Smubp-2_like, 1 hit
Gene3Di3.30.1370.50, 1 hit
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR014001 Helicase_ATP-bd
IPR027417 P-loop_NTPase
IPR001374 R3H_dom
IPR036867 R3H_dom_sf
IPR034072 R3H_Smubp-2
IPR004483 SMUBP-2/Hcs1-like
PfamiView protein in Pfam
PF01424 R3H, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SM00487 DEXDc, 1 hit
SM00393 R3H, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
SSF82708 SSF82708, 1 hit
TIGRFAMsiTIGR00376 TIGR00376, 1 hit
PROSITEiView protein in PROSITE
PS51061 R3H, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3Z5P5_MOUSE
AccessioniPrimary (citable) accession number: D3Z5P5
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 74 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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