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Protein
Submitted name:

YLP motif-containing protein 1

Gene

Ylpm1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
YLP motif-containing protein 1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Ylpm1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 12

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1926195 Ylpm1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

MaxQB - The MaxQuant DataBase

More...
MaxQBi
D3YWX2

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
D3YWX2

PeptideAtlas

More...
PeptideAtlasi
D3YWX2

PRoteomics IDEntifications database

More...
PRIDEi
D3YWX2

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
D3YWX2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000021244 Expressed in 284 organ(s), highest expression level in saccule of membranous labyrinth

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
D3YWX2 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
D3YWX2 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
D3YWX2, 1 interactor

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000021670

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1451 – 1471Sequence analysisAdd BLAST21
Coiled coili1999 – 2026Sequence analysisAdd BLAST28

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2400 Eukaryota
ENOG410YIR5 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00440000039837

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000168351

Database of Orthologous Groups

More...
OrthoDBi
58727at2759

TreeFam database of animal gene trees

More...
TreeFami
TF329361

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR027417 P-loop_NTPase
IPR026314 YLP_motif_con_p1

The PANTHER Classification System

More...
PANTHERi
PTHR13413 PTHR13413, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

D3YWX2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MYPNWGRYGG SSHYPPPPVP PPPPPVALPE ASPGPGYSSS TAPAAPSSSG
60 70 80 90 100
FMSFREQHLA QLQQLQQMHQ KQMQCVLQPH HLPPPPLPPP PVMPGGGYGD
110 120 130 140 150
WQPPPPPMPP PPGPALSYQK QQQYKHQMIH HQRDGPPGLV PMELESPPES
160 170 180 190 200
PPVPPGSYMP PSQSYMPPPQ PPPSYYPPSS AQPYLPPAQP SPSQSPPSQS
210 220 230 240 250
YLAPTPSYSS SSSSQSYLSH SQPYLPPSQA SPSRSSQGPS KPQLPPPPSI
260 270 280 290 300
PSGNKTAIQQ EPLESGAKNK TAEQKQAAPE PDPSTMTPQE QQQYWYRQHL
310 320 330 340 350
LSLQQRTKVH LPGHKKGLVT AKDVPEPIKE EAPGPAASQV AEPLAAEKPP
360 370 380 390 400
LPPPNEEAPP PLSPEEPQSE DSEDSEDSEE DARFKQLKAI AAHWQAAAAH
410 420 430 440 450
WQQQQQQRVG FQYQGIMQRH TQLQQILQQY QQVIQHSPHI QTMSLDVQLR
460 470 480 490 500
HYEMQQQQFQ HLFQDWEREF QLWEEQLHSY PHKDQLQEYE KQWKTWQGHM
510 520 530 540 550
KATQTYLQEK VNSFQTVKSQ YLGNMAMPPP FVPYSQMPPP LPTMPPPVLP
560 570 580 590 600
PSLPPPVMPP ALPTSIPPPG MPPPVMPPSL PTSVPPPGMP PSLSSGPPPV
610 620 630 640 650
LPPPALSSAG SPPVLPPPAL PGGPPILPLP PLSSATPPPG IPPPGAPQGM
660 670 680 690 700
PPQLTAPLPP ASGSQNSQIP EKPRQALLPT PVSFGSTPPS PYHPPPQSEQ
710 720 730 740 750
VNSKPLNKVF SSEQGLGESS ALSQSIIAAK DTPVKSGGLL ADPPKGSFLE
760 770 780 790 800
GPRGPRFDGP RRFEDLGSRC EGPRPKGPRF EGNRPDGPRP RYESHPAEGT
810 820 830 840 850
KSKWGTIPRG PASQFYITPN TSLSPRQSGP QWKGPKATVG QQHQQQPKQQ
860 870 880 890 900
PKSQAEPLSG NKEPLADTSN NQQKNLKIQS AAFSISADVK DTKAAQSNEN
910 920 930 940 950
LSDSQQEPTK SQVSEGPVEP SNWNQNSQSM ETEMDKAEGV TQPVSLANKP
960 970 980 990 1000
VPTQSTFPSK VGSMEGGAAA AALTADDFKP LGVGLSHSEN HQEKDLPQPD
1010 1020 1030 1040 1050
SRENRLEGNK GSSSSYRGPG QNRVEESRDK GLVNRGRGQI INRGPGLVKQ
1060 1070 1080 1090 1100
EDFHDKMMGR REDSREKMNR GEGNRDRVFV RPGSSRDKIP GGLQDSQDSR
1110 1120 1130 1140 1150
ANSRERGPPR RAGSQERGPP RRAGSRERVP PQRAGSRERV PPRGPGSRER
1160 1170 1180 1190 1200
GLGRPDFGHD RVPFRSELGD GGDKVYPYHR DEPSRASWNH GEERGHEEFP
1210 1220 1230 1240 1250
VDGRNAPIER ERLDDWDRKR YWRECERDYQ DDTLDSYSRE DRFSAPPSRS
1260 1270 1280 1290 1300
HDGDRRGPWW DDWERDQDMD EGYGREMDRD LDRDVDRIRR PLDIYDRNVD
1310 1320 1330 1340 1350
NEWDRDYGRP LDEQESQFRE RDIPSLPPLP PLPPLPPLDR YRDDRWREER
1360 1370 1380 1390 1400
NRDHGYDRDF RDRGELRIRE YPERGDTWRE KRDYVPDRMD WERERLSDRW
1410 1420 1430 1440 1450
YPSDVDRHSP MAEHMPSSHH SSEMMGSDAN LDSDQGLGGV MVLSQRQHEI
1460 1470 1480 1490 1500
ILKAAQELKM LREQKEQLQK LKDFGSEPQM ADHLPPPDSR LQNPSRPGMY
1510 1520 1530 1540 1550
PPPGSYRPPP PMGKPPGSIV RPSAPPARSS IPMTRPPVPI PPPPPPPPPP
1560 1570 1580 1590 1600
PPPPPVIKSK TSSVKQERWD EDSFFGLWDT NDDQGLNSEF KRDTATIPSA
1610 1620 1630 1640 1650
PVLPPPPVHS SIPPPGPMPM GMPPMSKPPP VQHTVDYGHG RDMPTNKVEQ
1660 1670 1680 1690 1700
IPYGERITLR PDPLPERSTF DADHAGQRDR YDRDRDREPY FDRPSNITDH
1710 1720 1730 1740 1750
RDFKRDRETH RDRDRDRVLD YERDRFDRER RPRDDRNQSY RDKKDHSSSR
1760 1770 1780 1790 1800
RGGFDRPSYD RKSDRPPYEG PPMFGGERRT YPEERMPLPA PALGHQPPPV
1810 1820 1830 1840 1850
PRVEKKPESK NVDDILKPPG RESRPERIVV IMRGLPGSGK THVAKLIRDK
1860 1870 1880 1890 1900
EVEFGGPAPR VLSLDDYFIA EVEKEEKDPD SGKKVKKKVM EYEYEADMEE
1910 1920 1930 1940 1950
TYRTSMFKTF KKTLDDGFFP FIILDAINDR VRHFDQFWSA AKTKGFEVYL
1960 1970 1980 1990 2000
AEMSADNQTC GKRNIHGRKL KEINKMAEHW EVAPRHMMRL DIRSLLQDAA
2010 2020 2030 2040 2050
IEEVEMEDFD ANIEDQKEEK KDAEEEESEL GYIPKSKWEM DTSEAKLDKL
2060 2070 2080 2090 2100
DGLRTGTKRK RDWEAIASRM EDYLQLPDDY ETRASEPGKK RVRWADLEEK
2110 2120 2130
KDADRKRAIG FVVGQTDWEK ITDESGHLAE RALNRTKYI
Length:2,139
Mass (Da):241,051
Last modified:April 5, 2011 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBC461BAFA1E934B7
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9R0I7YLPM1_MOUSE
YLP motif-containing protein 1
Ylpm1 Zap, Zap3
1,386Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
E9Q803E9Q803_MOUSE
YLP motif-containing protein 1
Ylpm1
1,433Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6YTL8F6YTL8_MOUSE
YLP motif-containing protein 1
Ylpm1
1,577Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC127582 Genomic DNA No translation available.
AC155811 Genomic DNA No translation available.
CR974585 Genomic DNA No translation available.

NCBI Reference Sequences

More...
RefSeqi
NP_848140.3, NM_178363.4

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.153183

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000021670; ENSMUSP00000021670; ENSMUSG00000021244

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
56531

UCSC genome browser

More...
UCSCi
uc007ogd.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC127582 Genomic DNA No translation available.
AC155811 Genomic DNA No translation available.
CR974585 Genomic DNA No translation available.
RefSeqiNP_848140.3, NM_178363.4
UniGeneiMm.153183

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protein-protein interaction databases

IntActiD3YWX2, 1 interactor
STRINGi10090.ENSMUSP00000021670

PTM databases

iPTMnetiD3YWX2

Proteomic databases

MaxQBiD3YWX2
PaxDbiD3YWX2
PeptideAtlasiD3YWX2
PRIDEiD3YWX2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000021670; ENSMUSP00000021670; ENSMUSG00000021244
GeneIDi56531
UCSCiuc007ogd.1 mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
56252
MGIiMGI:1926195 Ylpm1

Phylogenomic databases

eggNOGiKOG2400 Eukaryota
ENOG410YIR5 LUCA
GeneTreeiENSGT00440000039837
HOGENOMiHOG000168351
OrthoDBi58727at2759
TreeFamiTF329361

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Ylpm1 mouse

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000021244 Expressed in 284 organ(s), highest expression level in saccule of membranous labyrinth
ExpressionAtlasiD3YWX2 baseline and differential
GenevisibleiD3YWX2 MM

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR026314 YLP_motif_con_p1
PANTHERiPTHR13413 PTHR13413, 2 hits
SUPFAMiSSF52540 SSF52540, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD3YWX2_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D3YWX2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 5, 2011
Last modified: January 16, 2019
This is version 71 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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