UniProtKB - D3YUB9 (D3YUB9_MOUSE)
Protein
Submitted name:
Polyadenylate-binding protein 2
Gene
Pabpn1
Organism
Mus musculus (Mouse)
Status
Functioni
GO - Molecular functioni
- RNA binding Source: UniProtKB-UniRule
GO - Biological processi
- positive regulation of polynucleotide adenylyltransferase activity Source: InterPro
Keywordsi
Molecular function | RNA-bindingPROSITE-ProRule annotation |
Names & Taxonomyi
Protein namesi | Submitted name: Polyadenylate-binding protein 2Imported |
Gene namesi | Name:Pabpn1Imported |
Organismi | Mus musculus (Mouse)Imported |
Taxonomic identifieri | 10090 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus |
Proteomesi |
|
Organism-specific databases
MGIi | MGI:1859158 Pabpn1 |
Expressioni
Gene expression databases
Bgeei | ENSMUSG00000022194 Expressed in 292 organ(s), highest expression level in cerebral cortex |
ExpressionAtlasi | D3YUB9 baseline and differential |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 72 – 149 | RRMInterPro annotationAdd BLAST | 78 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 21 | DisorderedSequence analysisAdd BLAST | 21 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 1 – 18 | PolarSequence analysisAdd BLAST | 18 |
Phylogenomic databases
eggNOGi | KOG4209 Eukaryota KOG4728 Eukaryota ENOG4111PFV LUCA |
GeneTreei | ENSGT00940000154606 |
HOGENOMi | HOG000208465 |
OMAi | EGSMQID |
Family and domain databases
Gene3Di | 3.30.70.330, 1 hit |
InterProi | View protein in InterPro IPR012677 Nucleotide-bd_a/b_plait_sf IPR034911 PABP2 IPR035979 RBD_domain_sf IPR000504 RRM_dom |
PANTHERi | PTHR23236:SF33 PTHR23236:SF33, 1 hit |
Pfami | View protein in Pfam PF00076 RRM_1, 1 hit |
SMARTi | View protein in SMART SM00360 RRM, 1 hit |
SUPFAMi | SSF54928 SSF54928, 1 hit |
PROSITEi | View protein in PROSITE PS50102 RRM, 1 hit |
(1+)i Sequence
Sequence statusi: Fragment.
This entry has 1 described isoform and 5 potential isoforms that are computationally mapped.Show allAlign All
D3YUB9-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MDPQQECDSA SSSQASEELE AIKARVREME EEAEKLKELQ NEVEKQMNMS
60 70 80 90 100
PPPGNAGPVI MSLEEKMEAD ARSIYVGNVD YGATAEELEA HFHGCGSVNR
110 120 130 140 150
VTILCDKFSG HPKGFAYIEF SDKESVRTSL ALDESLFRGR QIKVIPKRTN
160
RPGISTTDRG FPRS
Computationally mapped potential isoform sequencesi
There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketQ8CCS6 | PABP2_MOUSE | Polyadenylate-binding protein 2 | Pabpn1 Pab2, Pabp2 | 302 | Annotation score: | ||
G3UY42 | G3UY42_MOUSE | Polyadenylate-binding protein 2 | Pabpn1 | 319 | Annotation score: | ||
G3UWS5 | G3UWS5_MOUSE | Polyadenylate-binding protein 2 | Pabpn1 | 178 | Annotation score: | ||
D3Z055 | D3Z055_MOUSE | Polyadenylate-binding protein 2 | Pabpn1 | 168 | Annotation score: | ||
G3UX74 | G3UX74_MOUSE | Polyadenylate-binding protein 2 | Pabpn1 | 73 | Annotation score: |
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Non-terminal residuei | 164 | Imported | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC116591 Genomic DNA No translation available. |
Genome annotation databases
Ensembli | ENSMUST00000140691; ENSMUSP00000115294; ENSMUSG00000022194 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC116591 Genomic DNA No translation available. |
3D structure databases
SMRi | D3YUB9 |
ModBasei | Search... |
Proteomic databases
jPOSTi | D3YUB9 |
MaxQBi | D3YUB9 |
PeptideAtlasi | D3YUB9 |
PRIDEi | D3YUB9 |
Genome annotation databases
Ensembli | ENSMUST00000140691; ENSMUSP00000115294; ENSMUSG00000022194 |
Organism-specific databases
MGIi | MGI:1859158 Pabpn1 |
Phylogenomic databases
eggNOGi | KOG4209 Eukaryota KOG4728 Eukaryota ENOG4111PFV LUCA |
GeneTreei | ENSGT00940000154606 |
HOGENOMi | HOG000208465 |
OMAi | EGSMQID |
Miscellaneous databases
ChiTaRSi | Pabpn1 mouse |
SOURCEi | Search... |
Gene expression databases
Bgeei | ENSMUSG00000022194 Expressed in 292 organ(s), highest expression level in cerebral cortex |
ExpressionAtlasi | D3YUB9 baseline and differential |
Family and domain databases
Gene3Di | 3.30.70.330, 1 hit |
InterProi | View protein in InterPro IPR012677 Nucleotide-bd_a/b_plait_sf IPR034911 PABP2 IPR035979 RBD_domain_sf IPR000504 RRM_dom |
PANTHERi | PTHR23236:SF33 PTHR23236:SF33, 1 hit |
Pfami | View protein in Pfam PF00076 RRM_1, 1 hit |
SMARTi | View protein in SMART SM00360 RRM, 1 hit |
SUPFAMi | SSF54928 SSF54928, 1 hit |
PROSITEi | View protein in PROSITE PS50102 RRM, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | D3YUB9_MOUSE | |
Accessioni | D3YUB9Primary (citable) accession number: D3YUB9 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | April 20, 2010 |
Last sequence update: | November 16, 2011 | |
Last modified: | October 16, 2019 | |
This is version 64 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |