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Protein
Submitted name:

Syntabulin

Gene

sybu

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of dorsal identity Source: ZFIN
  • regulation of canonical Wnt signaling pathway Source: ZFIN
  • regulation of Wnt signaling pathway involved in dorsal/ventral axis specification Source: ZFIN

Names & Taxonomyi

Protein namesi
Submitted name:
SyntabulinImported
Submitted name:
Syntabulin (syntaxin-interacting)Imported
Gene namesi
Name:sybuImported
Synonyms:synImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 16

Organism-specific databases

ZFINiZDB-GENE-060929-1202 sybu

Expressioni

Gene expression databases

BgeeiENSDARG00000060112

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000104835

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili125 – 145Sequence analysisAdd BLAST21
Coiled coili174 – 201Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IGP3 Eukaryota
ENOG410XQEB LUCA
GeneTreeiENSGT00520000055634
OMAiKEVTVRH
OrthoDBiEOG091G07I1

Family and domain databases

InterProiView protein in InterPro
IPR026198 Syntabulin
IPR028197 Syntaphilin/Syntabulin
PANTHERiPTHR16208 PTHR16208, 1 hit
PTHR16208:SF4 PTHR16208:SF4, 1 hit
PfamiView protein in Pfam
PF15290 Syntaphilin, 1 hit

Sequencei

Sequence statusi: Complete.

D3KVM2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLSKGKRCF SGSETDFSSS SSAGSYKTRE TQLSNSAGKN LSSRSRGPHI
60 70 80 90 100
RSLPVFKPAG SPSAPRDAEL YAPIRTPPKT PSFTNSSSCS NSSSSRRRTA
110 120 130 140 150
PVRYHSCGDN HGIKPPNPEQ YLTPLQQKEV AIRHLKTKLR DSENTVCDRE
160 170 180 190 200
SEIEELKSQL GRMREDWIEE ECHRVEAQLA LKEARKEIKQ LRQVVETMKN
210 220 230 240 250
SLMEKDKGIQ KYFIDINIQN RKLESLLHSM ELAQNGCNLQ DEPTLDFICE
260 270 280 290 300
APESSTEAKM ELELHCGEQA VEEMANSELL INDEMVNRVE ILMSTAVDSS
310 320 330 340 350
QDGSTKIISQ PGLSCLEPSV SEKSTKEHVS SIPIGAEDKG IQTDDVIYST
360 370 380 390 400
DLQTLLYQLL KLQGGGFPGL LVPSPNQSHD ISSAQAPKKS QKEELPEAHE
410 420 430 440 450
QDVAISTAQI VPSDSGLGFS EPEVGPEFME EMNSKNKAVV GKNHWSNNFF
460 470 480 490 500
VDLVAVAAPV LPTVAWLYSQ HGLVGGAPVY NIASLIRGCC VMGLHSLRHV

SHGPDT
Length:506
Mass (Da):55,641
Last modified:April 20, 2010 - v1
Checksum:iA26536B133A7C248
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR925805 Genomic DNA No translation available.
AB517947 Genomic DNA Translation: BAI77483.1
RefSeqiXP_005158281.1, XM_005158224.3
UniGeneiDr.56633

Genome annotation databases

EnsembliENSDART00000122081; ENSDARP00000104835; ENSDARG00000060112
GeneIDi568207

Similar proteinsi

Entry informationi

Entry nameiD3KVM2_DANRE
AccessioniPrimary (citable) accession number: D3KVM2
Secondary accession number(s): E7EXJ7, F1RD86
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 18, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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