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Entry version 50 (07 Oct 2020)
Sequence version 1 (23 Mar 2010)
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Protein
Submitted name:

F pilus assembly protein TraC

Gene

traC

Organism
Legionella longbeachae serogroup 1 (strain NSW150)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
LLON661367:LLO_RS09415-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
F pilus assembly protein TraCImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traCImported
Ordered Locus Names:LLO_1843Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiLegionella longbeachae serogroup 1 (strain NSW150)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri661367 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesLegionellaceaeLegionella
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001060 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
661367.LLO_1843

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
COG3451, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
CLU_007815_0_0_6

KEGG Orthology (KO)

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KOi
K12063

Identification of Orthologs from Complete Genome Data

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OMAi
AFITITQ

Database of Orthologous Groups

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OrthoDBi
182908at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR027417, P-loop_NTPase
IPR014117, TraC-F-type
IPR025955, TraC/Conjuga_ATPase

Pfam protein domain database

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Pfami
View protein in Pfam
PF11130, TraC_F_IV, 1 hit

Superfamily database of structural and functional annotation

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SUPFAMi
SSF52540, SSF52540, 1 hit

TIGRFAMs; a protein family database

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TIGRFAMsi
TIGR02746, TraC-F-type, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D3HTH9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGLNTAKWRD KTREMLYRMS HKLGEQVGIK PDSCVTTRKA LESLEVDLPA
60 70 80 90 100
LSKILPYETV TDGDIFVNRG SLGFGMMLTP MAGADESLMK ALAETFKNKL
110 120 130 140 150
TVGTDCTVLL YKHPWLSHSL SQNYEPILQQ GGIYAELAKQ SLQYHLNAIK
160 170 180 190 200
NGYKNGRNVP AGLSDYCCYL FISRPTQPGV EEQIERLRHD FESEFKVAGF
210 220 230 240 250
NLQRCNEHHF KMLIRALVSP NFNECSWPSV EERGLMIGES IPSPTTVYEI
260 270 280 290 300
GADAMDVSLA DEKGHLQYTR MVNCELTSYP NTLFGLWQIP DLFANLFKSE
310 320 330 340 350
QGIECPFLIS FTIRGMNQEK MKAKAKTRAK SLNANNNAIQ AFINPSISDE
360 370 380 390 400
ACEWQLVHEH ASRGELHLLT TFYNLILYTS KEKEREQVAK AIASYRQLGF
410 420 430 440 450
TLTQSRCKQW LRFLGSLPFM LTEGLFSSLE LLGMTKQLSH GNVANLLPVV
460 470 480 490 500
ADFKGARQGL IVPTYRHQLF YLDTFDDRAL PITNFNRLTV ASTGAGKSFF
510 520 530 540 550
EQAQILDGLS RGQQIFVIDL GGSYTHLCKL VGGSYIDVAT LTLNPFTLFD
560 570 580 590 600
FEGTTEIKGE NLNDYIQIRD LLAIMASPNE ALGEVQKAWL LDAVLATWNV
610 620 630 640 650
YGRHARMDNV LEALRHLLQK PESFNDQRLK DLLILLDKYG SSGIYGKMFN
660 670 680 690 700
SDTPLLNGSN FVVLEMGALK SNPELLTIAM FVMIVIIQGQ FYHSDRKRQK
710 720 730 740 750
RCVIDEAWQF LKAGANPLTA GFIEQGFRTA RKHNGGFAVI TQNLLDTMNT
760 770 780 790 800
LQGQAIAASS DTKIIMRQGD FKKYVQQNPD HFTELEATLI ESFGEAKMQG
810 820 830 840 850
FSNLMLQFGN VSTFHRYFCD PFSRVLFSTS GDEVSEIESL MEQGVSLAQA
860
VETVAHHYYG EV
Length:862
Mass (Da):96,938
Last modified:March 23, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC81CAA3DEB5FA8D4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
FN650140 Genomic DNA Translation: CBJ12221.1

NCBI Reference Sequences

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RefSeqi
WP_012979162.1, NC_013861.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CBJ12221; CBJ12221; LLO_1843

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
llo:LLO_1843

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN650140 Genomic DNA Translation: CBJ12221.1
RefSeqiWP_012979162.1, NC_013861.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi661367.LLO_1843

Genome annotation databases

EnsemblBacteriaiCBJ12221; CBJ12221; LLO_1843
KEGGillo:LLO_1843

Phylogenomic databases

eggNOGiCOG3451, Bacteria
HOGENOMiCLU_007815_0_0_6
KOiK12063
OMAiAFITITQ
OrthoDBi182908at2

Enzyme and pathway databases

BioCyciLLON661367:LLO_RS09415-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR027417, P-loop_NTPase
IPR014117, TraC-F-type
IPR025955, TraC/Conjuga_ATPase
PfamiView protein in Pfam
PF11130, TraC_F_IV, 1 hit
SUPFAMiSSF52540, SSF52540, 1 hit
TIGRFAMsiTIGR02746, TraC-F-type, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD3HTH9_LEGLN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D3HTH9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: October 7, 2020
This is version 50 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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