UniProtKB - D3GN36 (D3GN36_DANRE)
Protein
Submitted name:
mRNA for collagen XVb alpha 1 chain
Gene
col15a1b
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
GO - Molecular functioni
- extracellular matrix structural constituent Source: GO_Central
GO - Biological processi
- extracellular matrix organization Source: GO_Central
- eye development Source: ZFIN
- regulation of motor neuron axon guidance Source: ZFIN
Names & Taxonomyi
Protein namesi | Submitted name: mRNA for collagen XVb alpha 1 chainImported |
Gene namesi | |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Organism-specific databases
ZFINi | ZDB-GENE-070912-689, col15a1b |
Subcellular locationi
Extracellular region or secreted
- extracellular matrix Source: GO_Central
- extracellular space Source: GO_Central
Other locations
- collagen trimer Source: UniProtKB-KW
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 17 | Sequence analysisAdd BLAST | 17 | |
ChainiPRO_5003044006 | 18 – 1169 | Sequence analysisAdd BLAST | 1152 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 34 – 222 | LAM_G_DOMAINInterPro annotationAdd BLAST | 189 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 222 – 675 | DisorderedSequence analysisAdd BLAST | 454 | |
Regioni | 752 – 942 | DisorderedSequence analysisAdd BLAST | 191 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 223 – 238 | PolyampholyteSequence analysisAdd BLAST | 16 | |
Compositional biasi | 249 – 265 | PolyampholyteSequence analysisAdd BLAST | 17 | |
Compositional biasi | 302 – 322 | PolyampholyteSequence analysisAdd BLAST | 21 | |
Compositional biasi | 327 – 341 | Pro-richSequence analysisAdd BLAST | 15 | |
Compositional biasi | 413 – 430 | Pro-richSequence analysisAdd BLAST | 18 | |
Compositional biasi | 455 – 481 | Pro-richSequence analysisAdd BLAST | 27 | |
Compositional biasi | 540 – 563 | Pro-richSequence analysisAdd BLAST | 24 | |
Compositional biasi | 596 – 612 | Pro-richSequence analysisAdd BLAST | 17 | |
Compositional biasi | 814 – 830 | Pro-richSequence analysisAdd BLAST | 17 | |
Compositional biasi | 881 – 908 | Pro-richSequence analysisAdd BLAST | 28 | |
Compositional biasi | 920 – 934 | Pro-richSequence analysisAdd BLAST | 15 |
Keywords - Domaini
CollagenImportedARBA annotation, SignalSequence analysisPhylogenomic databases
OrthoDBi | 1362001at2759 |
Family and domain databases
CDDi | cd00247, Endostatin-like, 1 hit |
Gene3Di | 3.10.100.10, 1 hit |
InterProi | View protein in InterPro IPR016186, C-type_lectin-like/link_sf IPR008160, Collagen IPR010515, Collagenase_NC10/endostatin IPR013320, ConA-like_dom_sf IPR016187, CTDL_fold IPR001791, Laminin_G |
Pfami | View protein in Pfam PF01391, Collagen, 4 hits PF06482, Endostatin, 1 hit |
SMARTi | View protein in SMART SM00210, TSPN, 1 hit |
SUPFAMi | SSF49899, SSF49899, 1 hit SSF56436, SSF56436, 1 hit |
i Sequence
Sequence statusi: Complete.
D3GN36-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKFRLLSWLV GAHLALGYLS SALHVMEERG SKGHLILTDL VGMPLPPSVS
60 70 80 90 100
FITGYEGYPA YSFGPHANVG RLTQSFVPEP FFTDFAIIVT VKPSSSRGGV
110 120 130 140 150
LFAITDPSQT IVQLGLALTP VEDQTQRIVL YYSEPRSANS AEVASFKVPD
160 170 180 190 200
MTQQWSRFTL SVERQEVRLY MDCDEYHIAP FKRSQQPLSF KPGSGIFVAN
210 220 230 240 250
AGSTGLERFV GSIQQLVIKP DPRAAEEQCE EDDPSLQASG DRSGDGDYDD
260 270 280 290 300
EEEHARREET FGQTNNKEKT LRPTSPVEAP PIQSPDIEEG GFSGHVTPID
310 320 330 340 350
ERLLRGTYKT DETGERVGQK GERGEPGPAG PPGPPGPPGT SVPIRRSGQP
360 370 380 390 400
GPRGPQGPIG QPGGRGRPGK DGQPGSKGED GKPGQRGQTG PPGLPGESGV
410 420 430 440 450
KGEKGDPGVG RTGLPGPPGP PGPPGPSKPV KVPYGFDALG SGFGDADIDT
460 470 480 490 500
ELLRGPPGPP GPPGIPGPPG PNSPLGGLLP GPPGAPGKDG RDGQSGLPGV
510 520 530 540 550
PGQDGLPGQQ GPKGAKGEHG IRGPPGPKGE NGAPGRGPPG PFGTMGPRGL
560 570 580 590 600
PGPPGPPGPP GPINNNFMVD TLKDFEGSGE SGSFLGTGIL KGYQGPPGLP
610 620 630 640 650
GPPGPQGPPG ANGPPGLSVK GERGSPGPDG IHGLVGLPGA RGPKGDKGNP
660 670 680 690 700
GEKGERGRDG LNITGPPGPP GPPGPIINFQ DLFLNDTAAK LNLTKIRGLP
710 720 730 740 750
GPMGPEGLPG RAGFPGPRGP KGEIGFPGVQ GPPGLKGDKG EPGVSIAADG
760 770 780 790 800
SIITSLRGPR GPKGTKGDIG LAGPHGIPGP IGPPGLKGGY GIPGRPGRPG
810 820 830 840 850
IAGRKGDKGD ASGPSGPPGP PGPPGPPGRV IGLNGGPKGD NGYNGQKGEK
860 870 880 890 900
GDPGLPGPPG LPGRTGLVGP KGESIVGPPG DTGAPGPPGL PGYGSPGPQG
910 920 930 940 950
PPGAPGPPGT SSLYSSAASL PGPPGPPGPP GAPGYGNPVS TYKNSQTLMR
960 970 980 990 1000
ESSQAAEGTM GYVIDKSELY IRELKSFLPG YNLLPDTTHS MPALHLVALN
1010 1020 1030 1040 1050
APFSGDMHGI RGADYQCYQQ ARARGLTSTY RAFLSSHLQD LSTIVKKADR
1060 1070 1080 1090 1100
FNLPVVNLKG EVLFSSWMAM FSGNGGVFDP LTPIYSFDGR NVLTDQAWSQ
1110 1120 1130 1140 1150
KLVWHGSSTV GIRMTTNYCE AWRTGDMAVT GQASLLQTGR LLGQHTRSCS
1160
NHFIILCIEN SYIQHPGRN
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | FN432724 mRNA Translation: CBA11056.2 |
RefSeqi | NP_001165841.2, NM_001172370.2 |
Genome annotation databases
GeneIDi | 558137 |
KEGGi | dre:558137 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | FN432724 mRNA Translation: CBA11056.2 |
RefSeqi | NP_001165841.2, NM_001172370.2 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
GeneIDi | 558137 |
KEGGi | dre:558137 |
Organism-specific databases
CTDi | 558137 |
ZFINi | ZDB-GENE-070912-689, col15a1b |
Phylogenomic databases
OrthoDBi | 1362001at2759 |
Family and domain databases
CDDi | cd00247, Endostatin-like, 1 hit |
Gene3Di | 3.10.100.10, 1 hit |
InterProi | View protein in InterPro IPR016186, C-type_lectin-like/link_sf IPR008160, Collagen IPR010515, Collagenase_NC10/endostatin IPR013320, ConA-like_dom_sf IPR016187, CTDL_fold IPR001791, Laminin_G |
Pfami | View protein in Pfam PF01391, Collagen, 4 hits PF06482, Endostatin, 1 hit |
SMARTi | View protein in SMART SM00210, TSPN, 1 hit |
SUPFAMi | SSF49899, SSF49899, 1 hit SSF56436, SSF56436, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | D3GN36_DANRE | |
Accessioni | D3GN36Primary (citable) accession number: D3GN36 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | March 23, 2010 |
Last sequence update: | May 31, 2011 | |
Last modified: | December 2, 2020 | |
This is version 72 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |