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Protein
Submitted name:

LH1 beta polypeptide

Gene

pufB

Organism
Thermochromatium tepidum (Chromatium tepidum)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.SAAS annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi19Magnesium (bacteriochlorophyll axial ligand)UniRule annotation1
Metal bindingi37Magnesium (bacteriochlorophyll a 1 axial ligand); via tele nitrogenCombined sources1
Metal bindingi37Magnesium (bacteriochlorophyll a 11 axial ligand); via tele nitrogenCombined sources1
Metal bindingi37Magnesium (bacteriochlorophyll a 12 axial ligand); via tele nitrogenCombined sources1
Metal bindingi37Magnesium (bacteriochlorophyll a 13 axial ligand); via tele nitrogenCombined sources1
Metal bindingi37Magnesium (bacteriochlorophyll a 2 axial ligand); via tele nitrogenCombined sources1
Metal bindingi37Magnesium (bacteriochlorophyll axial ligand)UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLight-harvesting polypeptideSAAS annotation
LigandBacteriochlorophyllSAAS annotation, Chlorophyll, Chromophore, MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationCombined sourcesSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
LH1 beta polypeptideImported
Gene namesi
Name:pufBImported
OrganismiThermochromatium tepidum (Chromatium tepidum)Imported
Taxonomic identifieri1050 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeThermochromatium

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei20 – 43HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Keywords - Cellular componenti

Antenna complexSAAS annotation, Cell membraneSAAS annotation, Membrane

Interactioni

Protein-protein interaction databases

DIPiDIP-60694N
IntActiD2Z0P1, 1 interactor

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3WMMX-ray3.010/2/4/6/8/B/E/G/J/N/P/R/T/V/X/Z1-47[»]
4V8KX-ray3.01A0/A2/A4/A6/A8/AB/AE/AG/AJ/AN/AP/AR/AT/AV/AX/AZ/B0/B2/B4/B6/B8/BB/BE/BG/BJ/BN/BP/BR/BT/BV1-47[»]
5B5MX-ray3.300/2/4/6/8/AB/AD/AF/AH/AJ/AL/B/E/G/J/N/P/R/T/V/X/Z/c/e/g/i/k/n/q/s1-47[»]
5B5NX-ray3.300/2/4/6/8/AB/AD/AF/AH/AJ/AL/B/E/G/J/N/P/R/T/V/X/Z/c/e/g/i/k/n/q/s1-47[»]
5Y5SX-ray1.900/2/4/6/8/B/E/G/J/N/P/R/T/V/X/Z1-47[»]
SMRiD2Z0P1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini13 – 47LHCInterPro annotationAdd BLAST35

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Family and domain databases

InterProiView protein in InterPro
IPR000066 Antenna_a/b
IPR002362 Antenna_beta
IPR035889 Light-harvesting_complex
PfamiView protein in Pfam
PF00556 LHC, 1 hit
PIRSFiPIRSF002900 Antenna_beta, 1 hit
PRINTSiPR00674 LIGHTHARVSTB
SUPFAMiSSF56918 SSF56918, 1 hit

Sequencei

Sequence statusi: Complete.

D2Z0P1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MAEQKSLTGL TDDEAKEFHA IFMQSMYAWF GLVVIAHLLA WLYRPWL
Length:47
Mass (Da):5,529
Last modified:March 23, 2010 - v1
Checksum:i412B60E295E08030
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB543090 Genomic DNA Translation: BAI67780.1

Similar proteinsi

Entry informationi

Entry nameiD2Z0P1_THETI
AccessioniPrimary (citable) accession number: D2Z0P1
Entry historyiIntegrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: June 20, 2018
This is version 35 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

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