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UniProtKB - D2WF19 (D2WF19_RHIIR)

Entry version 46 (12 Aug 2020)
Sequence version 1 (02 Mar 2010)
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Protein
Submitted name:

ATP-binding cassette transporter 1

Gene

ABC1

Organism
Rhizophagus irregularis (Arbuscular mycorrhizal fungus) (Glomus intraradices)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi646 – 653ATPPROSITE-ProRule annotation8
Nucleotide bindingi1293 – 1300ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandATP-bindingPROSITE-ProRule annotationImportedARBA annotation, Nucleotide-binding

Protein family/group databases

Transport Classification Database

More...TCDBi		3.A.1.208.32, the atp-binding cassette (abc) superfamily

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
ATP-binding cassette transporter 1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ABC1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRhizophagus irregularis (Arbuscular mycorrhizal fungus) (Glomus intraradices)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri4876 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Fungi › Fungi incertae sedis › Mucoromycota › Glomeromycotina › Glomeromycetes › Glomerales › Glomeraceae › Rhizophagus

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei31 – 49HelicalSequence analysisAdd BLAST19
Transmembranei70 – 92HelicalSequence analysisAdd BLAST23
Transmembranei98 – 119HelicalSequence analysisAdd BLAST22
Transmembranei131 – 149HelicalSequence analysisAdd BLAST19
Transmembranei161 – 182HelicalSequence analysisAdd BLAST22
Transmembranei264 – 282HelicalSequence analysisAdd BLAST19
Transmembranei317 – 341HelicalSequence analysisAdd BLAST25
Transmembranei393 – 414HelicalSequence analysisAdd BLAST22
Transmembranei420 – 439HelicalSequence analysisAdd BLAST20
Transmembranei518 – 538HelicalSequence analysisAdd BLAST21
Transmembranei558 – 579HelicalSequence analysisAdd BLAST22
Transmembranei931 – 954HelicalSequence analysisAdd BLAST24
Transmembranei974 – 1005HelicalSequence analysisAdd BLAST32
Transmembranei1049 – 1071HelicalSequence analysisAdd BLAST23
Transmembranei1077 – 1097HelicalSequence analysisAdd BLAST21
Transmembranei1168 – 1187HelicalSequence analysisAdd BLAST20

Keywords - Cellular componenti

Membrane

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini277 – 574ABC transmembrane type-1InterPro annotationAdd BLAST298
Domaini612 – 836ABC transporterInterPro annotationAdd BLAST225
Domaini945 – 1222ABC transmembrane type-1InterPro annotationAdd BLAST278
Domaini1259 – 1493ABC transporterInterPro annotationAdd BLAST235

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisARBA annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.20.1560.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR003593, AAA+_ATPase
IPR011527, ABC1_TM_dom
IPR036640, ABC1_TM_sf
IPR003439, ABC_transporter-like
IPR017871, ABC_transporter_CS
IPR027417, P-loop_NTPase

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00664, ABC_membrane, 2 hits
PF00005, ABC_tran, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00382, AAA, 2 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540, SSF52540, 2 hits
SSF90123, SSF90123, 2 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50929, ABC_TM1F, 2 hits
PS00211, ABC_TRANSPORTER_1, 2 hits
PS50893, ABC_TRANSPORTER_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D2WF19-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLCRDKDGWG PWRPDLPNQQ FPDFTDCFEE GVILTSVNLL LIVLGFYEIR 
        60         70         80         90        100
RYSKKHAVLP LHALNNWHNI AITITLYLLI ALSIINFVST LWSDWQLLNI 
       110        120        130        140        150
MVISSFINLF TMFVAYSVYK KSYTHSHVSS PVLLLYWLFY LIAHILKLRT 
       160        170        180        190        200
LVLMGYASKP FYFFTTLFST ILVLVVFVLE LLPKPQSDYE LINGDDNLNC 
       210        220        230        240        250
PEESANIFSR STFYWMTPLM KLGHQKFLTM DDLWNLDPQY RSKKISEDFD 
       260        270        280        290        300
VAWNKELKKK NPSLLRAITL TFGGQFAFAA AFKAVQDILN FVQPQLLGEL 
       310        320        330        340        350
MEFVNSQRDR ETSQPAYRGY CIAILMFVTA VIQTMFLHQY FQLCFISGMR 
       360        370        380        390        400
VKAALVTAIY QKAFKLSNTS RQKSTVGEIV NHMSVDAQEL MDLFTYLHIA 
       410        420        430        440        450
WSGPLQIILA LYFLHQTMGV STYAGVGIMI MMVPVNAYLA NKMKILQKKQ 
       460        470        480        490        500
MKNKDERIKL MVSLYNEILN GIKVIKLYAW EQAFLKKVRN DLELKTLKRL 
       510        520        530        540        550
GYLYAVQSFT WTSTVSHLFP IFTPFLVSFA TFAVYVLISN SPLTVQVVFV 
       560        570        580        590        600
AIPLFNLLQF PLAVFPSVIT SIIEASVALR RVEEYLTSEE LDPKAVIRQG 
       610        620        630        640        650
YYDTEDERSE LVPVKNGTFG WGNSGEAVLE DINLSVKKGE LVAIVGKVGA 
       660        670        680        690        700
GKSSLLSSLL GEMEKIGGEV IVKGHVAYVH QTPWIMNATL RDNITFGYEY 
       710        720        730        740        750
KPELYDEIIE ACALKPDIAI LPGGDLTEIG EKGINLSGGQ KARVALARAV 
       760        770        780        790        800
YARADVYLFD DTLSAVDAHV GKHIFDKVVG SNGILRTKAR IFVTHGIHYL 
       810        820        830        840        850
SKTDSVVMMR DGKIIEQGHF DSLMKLKSEL FNLIDEFGQQ EESNNLLDDE 
       860        870        880        890        900
PPDDPEELMP LAYETDEVAT DQRSEETVSQ LRERRVSVPS IHRRASTATV 
       910        920        930        940        950
KNESKREQQK NELITKEEMA KGSVSWQVYS SYLKSCGVVT ITFWIITLVI 
       960        970        980        990       1000
SQGIQVATNV FLKYWSSEES NERILLYFVI YGLLGLLFSL MVIFQTIVLW 
      1010       1020       1030       1040       1050
VFCFFRAARK LHHQMLDGVI RSPMSFFDTT PLGRILNRFS KDIYTIDELL 
      1060       1070       1080       1090       1100
PRIFAGYFRT FFVVLSTIFV ISFSTPLFII LIIPMTFMYI YIQTYYLSTS 
      1110       1120       1130       1140       1150
RELKRLDSVT RSPIYAHFQE TLGGLTTIRA FQQMNRFIRD NETKLDVNQK 
      1160       1170       1180       1190       1200
AYFPSFSSNR WLAVRLEFLG SIIIFGAAIF SVISVLTTGN IDAGLVGLSV 
      1210       1220       1230       1240       1250
SYALSVTQAL NWAVRQFCEI ETNIVSVERV KEYIDLPSEA PVVIQDNRPD 
      1260       1270       1280       1290       1300
PTWPQNGLIE YQNYSTRYRQ GLELVLKGVS FVINPREKVG IVGRTGAGKS 
      1310       1320       1330       1340       1350
SLTLSLFRLI EAVDGAILMD GVDISKIGLY DLRSRLTIIP QDPILFEGTV 
      1360       1370       1380       1390       1400
EFNLDPFETH DEVEIWQALQ SAHLKDYISK LEGKLHAKIL EGGDNFSQGQ 
      1410       1420       1430       1440       1450
RQLLCLARAL LRRSNIIVLD EATACVDVET DFQIQNTIRN EFNWATLLCI 
      1460       1470       1480       1490       1500
AHRLRTIIDY DRVLVLDEGN VVEFDTPYNL LQNPNSLFYK LCEQSNEFDY 
      1510 
LKDLATKNHS PKR
Length:1,513
Mass (Da):172,430
Last modified:March 2, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB6CB534F90294013
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
GQ249346 mRNA Translation: ADB03433.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GQ249346 mRNA Translation: ADB03433.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein family/group databases

TCDBi3.A.1.208.32, the atp-binding cassette (abc) superfamily

Family and domain databases

Gene3Di1.20.1560.10, 2 hits
InterProiView protein in InterPro
IPR003593, AAA+_ATPase
IPR011527, ABC1_TM_dom
IPR036640, ABC1_TM_sf
IPR003439, ABC_transporter-like
IPR017871, ABC_transporter_CS
IPR027417, P-loop_NTPase
PfamiView protein in Pfam
PF00664, ABC_membrane, 2 hits
PF00005, ABC_tran, 2 hits
SMARTiView protein in SMART
SM00382, AAA, 2 hits
SUPFAMiSSF52540, SSF52540, 2 hits
SSF90123, SSF90123, 2 hits
PROSITEiView protein in PROSITE
PS50929, ABC_TM1F, 2 hits
PS00211, ABC_TRANSPORTER_1, 2 hits
PS50893, ABC_TRANSPORTER_2, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD2WF19_RHIIR
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D2WF19
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: August 12, 2020
This is version 46 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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