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Entry version 53 (17 Jun 2020)
Sequence version 1 (02 Mar 2010)
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Protein

CBM6 domain-containing protein

Gene

Htur_1460

Organism
Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) (Halococcus turkmenicus)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
HTUR543526:GH7B-1488-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

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CAZyi
CBM35 Carbohydrate-Binding Module Family 35
GH97 Glycoside Hydrolase Family 97

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
CBM6 domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Htur_1460Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHaloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) (Halococcus turkmenicus)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri543526 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiArchaeaEuryarchaeotaStenosarchaea groupHalobacteriaNatrialbalesNatrialbaceaeHaloterrigena
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001903 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

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STRINGi
543526.Htur_1460

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini626 – 768CBM6InterPro annotationAdd BLAST143

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni191 – 226DisorderedSequence analysisAdd BLAST36
Regioni249 – 276DisorderedSequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi201 – 218PolarSequence analysisAdd BLAST18

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
arCOG03771 Archaea
arCOG07560 Archaea
arCOG09022 Archaea
COG4945 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_265618_0_0_2

KEGG Orthology (KO)

More...
KOi
K21574

Identification of Orthologs from Complete Genome Data

More...
OMAi
AGSANWE

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.260, 1 hit
2.70.98.10, 1 hit
3.20.20.70, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR013785 Aldolase_TIM
IPR005084 CMB_fam6
IPR008979 Galactose-bd-like_sf
IPR014718 GH-type_carb-bd
IPR029483 GH97_C
IPR019563 GH97_catalytic
IPR029486 GH97_N
IPR019248 Glucodextran_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14509 GH97_C, 1 hit
PF14508 GH97_N, 1 hit
PF09985 Glucodextran_C, 1 hit
PF10566 Glyco_hydro_97, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49785 SSF49785, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51175 CBM6, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D2RQL5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLAAAAYTRA VPERAAARVS NGDDDAVQRV SSPDGTVEMT VDVSDGTPRY
60 70 80 90 100
AVAVDGTTYL EPSTVGFDFR NQPSFGASAD GTTGSEVAVT GSERASETEV
110 120 130 140 150
WEPVWGSYDR VSAEYNALII GLEETAEPGR SANLEVRVFD DGVGLRVVFG
160 170 180 190 200
DSFASNSGRA VVTSENTAFA FADDDTAWWI RNEVTNPRFE QEYEETPLSE
210 220 230 240 250
IPGSSRETRP TGTPMRNGAH TPLTVEAGDG DVYLSVHEAD LEDYAAATLA
260 270 280 290 300
PRSDEGGTEL VTELTPLPDG TKASLSLPNA TPWRTIQIGR RPGDLIESEL
310 320 330 340 350
IPLLSAELEE SAMPTVDGEP DTDWIEPRKY VGIWWTMIAG SANWEYRPDD
360 370 380 390 400
SFDSPEDAAG YVHGARTERM KRYMNFAAEN GIDSVLVEGW NEGWDTYPGD
410 420 430 440 450
GTGLEFGVDD SYPDFDVREV TDFGRSLESG VEMTIHNETA GALPHYEDQF
460 470 480 490 500
LNDDIFRQYE DVGIHSIKNG YVSDEGLGIE GDGAEPTHNQ HNQLAVNHHR
510 520 530 540 550
LVIEAAAANR QLLEIHEGIK PTGEIRTYPN VANREVVKAQ EYDGFEQLSA
560 570 580 590 600
DVAPDHHVTL PFTRNLAGPV SYQPGIFDIT FNDDRGGQIQ TTRAKQLALY
610 620 630 640 650
PNYLSGLQMV ADRVEAYVDE TLAVGECLQA ASGDIDGFVT LDEWRNAFGT
660 670 680 690 700
NYVAVDPNRV PSGSSVSFIV EDADAGTHEL HLRYAAAPED NAQRVVEAGE
710 720 730 740 750
TQATLRVNGE TTTINPDFTD YWDQWEVFTT EIDLEDGDNE VAIELQYDDG
760 770 780 790 800
EEFEGDVGGF NLNTIGITEP GDRSPMPAEY EGYTPENENF DAKPAFEFIE
810 820 830 840 850
SVPAAGWDET NVVDSEIGDY VVTARRKGEE WYVGAMTDEG GRAVDVPLEF
860 870 880 890 900
LAPGNSGCQG RGMGSKGHGN GPKEPKYVAE IYSDGLGGGY ESDPEAVRID
910 920 930 940 950
EAVVDPSATV LASMARSGGT AIRLRPATGT ERKRLPTYER PTQDVRYEID
960 970 980 990 1000
DQAGLGEPFI AATGSNDGDF VGGTTVAIEI DGERETVDNV RLSPGATDET
1010 1020 1030 1040 1050
VELGYAITSI GTYDVVLRDP DDGTVLASET VTVAPGDLVA EFDDPAGDDH
1060 1070 1080 1090 1100
GPGEYTYPTS DDFRDGAFDL RSFAVYEADD AYRFVFEVEE LYDTFGGEFS
1110 1120 1130 1140 1150
PHYFAVYLRD PSRDGGRTTE LGDLEVTAAF EEPWHYRVAA SGFGSSVVDA
1160 1170 1180 1190 1200
AGTSLGSPTT VVDFESDTAI LSVEKGTLSV DIANAEVVPV VGSEDRGTFR
1210 1220 1230 1240 1250
AVDVEAEGYV FGGAREDAIE NAPRIIDHLT PPGVDQSDAL AYDADSLATL

PFVPL
Length:1,255
Mass (Da):135,878
Last modified:March 2, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE5A65E273986BF99
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
CP001860 Genomic DNA Translation: ADB60346.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ADB60346; ADB60346; Htur_1460

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
htu:Htur_1460

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001860 Genomic DNA Translation: ADB60346.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi543526.Htur_1460

Protein family/group databases

CAZyiCBM35 Carbohydrate-Binding Module Family 35
GH97 Glycoside Hydrolase Family 97

Genome annotation databases

EnsemblBacteriaiADB60346; ADB60346; Htur_1460
KEGGihtu:Htur_1460

Phylogenomic databases

eggNOGiarCOG03771 Archaea
arCOG07560 Archaea
arCOG09022 Archaea
COG4945 LUCA
HOGENOMiCLU_265618_0_0_2
KOiK21574
OMAiAGSANWE

Enzyme and pathway databases

BioCyciHTUR543526:GH7B-1488-MONOMER

Family and domain databases

Gene3Di2.60.120.260, 1 hit
2.70.98.10, 1 hit
3.20.20.70, 2 hits
InterProiView protein in InterPro
IPR013785 Aldolase_TIM
IPR005084 CMB_fam6
IPR008979 Galactose-bd-like_sf
IPR014718 GH-type_carb-bd
IPR029483 GH97_C
IPR019563 GH97_catalytic
IPR029486 GH97_N
IPR019248 Glucodextran_C
PfamiView protein in Pfam
PF14509 GH97_C, 1 hit
PF14508 GH97_N, 1 hit
PF09985 Glucodextran_C, 1 hit
PF10566 Glyco_hydro_97, 1 hit
SUPFAMiSSF49785 SSF49785, 1 hit
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD2RQL5_HALTV
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D2RQL5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: June 17, 2020
This is version 53 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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