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Protein
Submitted name:

Glycoside hydrolase family 43

Gene

Slin_2108

Organism
Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolaseImported

Enzyme and pathway databases

BioCyciSLIN504472:GHKB-2081-MONOMER

Protein family/group databases

CAZyiCBM6 Carbohydrate-Binding Module Family 6
GH43 Glycoside Hydrolase Family 43

Names & Taxonomyi

Protein namesi
Submitted name:
Glycoside hydrolase family 43Imported
Gene namesi
Ordered Locus Names:Slin_2108Imported
OrganismiSpirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)Imported
Taxonomic identifieri504472 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeSpirosoma
Proteomesi
  • UP000002028 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_500303366124 – 650Sequence analysisAdd BLAST627

Interactioni

Protein-protein interaction databases

STRINGi504472.Slin_2108

Structurei

3D structure databases

ProteinModelPortaliD2QDL3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini523 – 649CBM6InterPro annotationAdd BLAST127

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105DSG Bacteria
COG3507 LUCA
OMAiWIYFSAN
OrthoDBiPOG091H06FO

Family and domain databases

Gene3Di2.115.10.20, 1 hit
2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR006584 Cellulose-bd_IV
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR006710 Glyco_hydro_43
IPR023296 Glyco_hydro_beta-prop_sf
PfamiView protein in Pfam
PF03422 CBM_6, 1 hit
PF04616 Glyco_hydro_43, 1 hit
SMARTiView protein in SMART
SM00606 CBD_IV, 1 hit
SUPFAMiSSF49785 SSF49785, 1 hit
SSF49899 SSF49899, 1 hit
SSF75005 SSF75005, 1 hit
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit

Sequencei

Sequence statusi: Complete.

D2QDL3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNRYFSLFLI LSTLLSGAPA VHAQQTSNYT QVNTYVNPVL PGDHPDPTML
60 70 80 90 100
RVGDDFYHCG SSFHFTPYLP IYHSKDMVHW EVISRVVPPT ASFVSDRPSA
110 120 130 140 150
GIWQGAITYF YGSYWIYFSA NGQWFSKASS PKGPWSEPVR VKGDPKTGPL
160 170 180 190 200
GYDNSIFVDD DGKPYMVIKN GQKTNRLQEL GRDGQLTASA IDLDWVNAKL
210 220 230 240 250
QYSWAEGPVM CKRNGYYYYF PAGDVSGGQY AMRGKALTAD STQWERLGDF
260 270 280 290 300
FKPITDPKTG FRRPNHISAP IQLADGTWWT IGQSYEKPLE GADWSGMGRQ
310 320 330 340 350
TGLYQVIWEG DRPWGLAPTT KPVARPNLPQ SGILWRSAQS DRFDSDVLSP
360 370 380 390 400
NWHFLSKRVA DRYSLSARKG WVRLSPDTAR VHLMQKETDH YYTAVTRVDL
410 420 430 440 450
NADDPAAKAG IYLTNGNQKV FAQLYSGFDT GKKIVFRLDT AIRTVPNSVG
460 470 480 490 500
SVVWLKVERN EHQLTGYYSR DGTKWTAVGP PISSVSLDKA QPNFNSWVGT
510 520 530 540 550
SIGLFAEGKP ADFDFFICKD GFSSLPAVGY SNYYGVEKTG VTAGSGVTND
560 570 580 590 600
SSQGGWFMLS GVDLGMGNDA AKQVQLQVST TMEGTLELWL DDLSNGKKIA
610 620 630 640 650
TIPFKSTTGK ATSKTVSQSV KGVSGHHDVF VKFPAGKANI VTVKALQFQK
Length:650
Mass (Da):71,932
Last modified:March 2, 2010 - v1
Checksum:iAC589723CABC2FCB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001769 Genomic DNA Translation: ADB38143.1

Genome annotation databases

EnsemblBacteriaiADB38143; ADB38143; Slin_2108
KEGGisli:Slin_2108

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001769 Genomic DNA Translation: ADB38143.1

3D structure databases

ProteinModelPortaliD2QDL3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi504472.Slin_2108

Protein family/group databases

CAZyiCBM6 Carbohydrate-Binding Module Family 6
GH43 Glycoside Hydrolase Family 43

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADB38143; ADB38143; Slin_2108
KEGGisli:Slin_2108

Phylogenomic databases

eggNOGiENOG4105DSG Bacteria
COG3507 LUCA
OMAiWIYFSAN
OrthoDBiPOG091H06FO

Enzyme and pathway databases

BioCyciSLIN504472:GHKB-2081-MONOMER

Family and domain databases

Gene3Di2.115.10.20, 1 hit
2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR006584 Cellulose-bd_IV
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR006710 Glyco_hydro_43
IPR023296 Glyco_hydro_beta-prop_sf
PfamiView protein in Pfam
PF03422 CBM_6, 1 hit
PF04616 Glyco_hydro_43, 1 hit
SMARTiView protein in SMART
SM00606 CBD_IV, 1 hit
SUPFAMiSSF49785 SSF49785, 1 hit
SSF49899 SSF49899, 1 hit
SSF75005 SSF75005, 1 hit
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD2QDL3_SPILD
AccessioniPrimary (citable) accession number: D2QDL3
Entry historyiIntegrated into UniProtKB/TrEMBL: March 2, 2010
Last sequence update: March 2, 2010
Last modified: November 7, 2018
This is version 49 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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