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UniProtKB - D2AQZ9 (D2AQZ9_STRRD)

Entry version 44 (07 Oct 2020)
Sequence version 1 (09 Feb 2010)
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Protein
Submitted name:

Transposase Tn3 family protein

Gene

Sros_3614

Organism
Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-bindingARBA annotation
Biological processDNA recombinationARBA annotation, TranspositionARBA annotation

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		SROS479432:G1GGL-3530-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Transposase Tn3 family proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Sros_3614Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiStreptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri479432 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Actinobacteria › Streptosporangiales › Streptosporangiaceae › Streptosporangium ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002029 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		479432.Sros_3614

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini6 – 153DUF4158InterPro annotationAdd BLAST148
Domaini602 – 992DDE_Tnp_Tn3InterPro annotationAdd BLAST391

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the transposase 7 family.ARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG4644, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_009098_1_0_11

Identification of Orthologs from Complete Genome Data

More...OMAi		VIHYISK

Database of Orthologous Groups

More...OrthoDBi		45599at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR025296, DUF4158
IPR002513, Tn3_Tnp_DDE_dom

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01526, DDE_Tnp_Tn3, 1 hit
PF13700, DUF4158, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D2AQZ9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MARVLDEDEL VGNWTLVGDE LDQLSGRRGV TKLGFALLLR FYALNGRFPT 
        60         70         80         90        100
GRAELPDQAV AYVARLVDVP ASELGLYEWD GRTIKDHRKD IRKYFGFREC 
       110        120        130        140        150
SLADSDKAAD WLAAQVCLKE RQVDRVRAEL LAHLRQERIE PPARDRIRRI 
       160        170        180        190        200
IGTALRQAEQ TQTSRISSRI PAEAVPQLLA LIAKSTDPGD GPEDQDEDDG 
       210        220        230        240        250
ALFGAAEAAA VDVFAVIREE PGNVSVKTIE REVFKLTAIG KVGLPDNLFA 
       260        270        280        290        300
DVAPKVLAAW RARVAAEAPS HLRSHPHDVK VTLLAAYLYC RSREITDTLV 
       310        320        330        340        350
DLLIATVHRI NARADTKVIS DFVAELKRVS GKENILFKMA EAALESPQAR 
       360        370        380        390        400
VEDVIYPAVP GGYKTLVQLL HEYRAKGTSY RQHKQRVFKA SYTNHYRIGL 
       410        420        430        440        450
IQILEVLEFG STNTVHTPMV QALTLIKRYK AEQSNRIKCY ALGEHVPVDG 
       460        470        480        490        500
IVPAELVELM YRADSTKRQR ILRTVYECGV FQSLREKLRC KEIWVHGADR 
       510        520        530        540        550
WRNPDDDLPK DFEANRTENY AKLRKPLDPQ VFVDQLREEM DTELSALNDA 
       560        570        580        590        600
LGGKGLTWLK IAERRNAGAI HLTPLDAAPE PRNLRRLKAA IRDRWGVVPL 
       610        620        630        640        650
MDMLTETALR TGCLNVFTPA GTQNHLDPAV LFERLLLLIY AYGTGTGIRA 
       660        670        680        690        700
VAAGDHPHTE DDLRYARRRY LTVEACREVA RVIANATFAV RQAALWGVGT 
       710        720        730        740        750
TAVASDSTHF SAFDQNIFTE WHSRYRRAKR GVLIYWTVEV GGSMAVHSQL 
       760        770        780        790        800
ISCSASEVHA MVEGAMRHGT DMDIEQNFVD SHGASFVGFG ITRLLDFDLV 
       810        820        830        840        850
ARFKQINKMK LYVPGRGEDF SYPLLSPALT RPIRWDIITQ NYDIMMKYAT 
       860        870        880        890        900
AIRLRTASTE ALLRRFTSET THPAYAAMLE VGRAQRTIFL TRWLRDRDLQ 
       910        920        930        940        950
RETESGLNVV ENYNGVNDYI KFGKRGELAS NRREEQELGM LCLHILQSAL 
       960        970        980        990       1000
GLINTLMIQD TLALPEWENV LTDADRRGLT PLFHTNMTPY GEIQLRTDRR 

LDLTDLPTA
Length:1,009
Mass (Da):113,800
Last modified:February 9, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2E94BB5A4899474D
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP001814 Genomic DNA Translation: ACZ86546.1

NCBI Reference Sequences

More...RefSeqi		WP_012890289.1, NC_013595.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ACZ86546; ACZ86546; Sros_3614

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		sro:Sros_3614

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001814 Genomic DNA Translation: ACZ86546.1
RefSeqiWP_012890289.1, NC_013595.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi479432.Sros_3614

Genome annotation databases

EnsemblBacteriaiACZ86546; ACZ86546; Sros_3614
KEGGisro:Sros_3614

Phylogenomic databases

eggNOGiCOG4644, Bacteria
HOGENOMiCLU_009098_1_0_11
OMAiVIHYISK
OrthoDBi45599at2

Enzyme and pathway databases

BioCyciSROS479432:G1GGL-3530-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR025296, DUF4158
IPR002513, Tn3_Tnp_DDE_dom
PfamiView protein in Pfam
PF01526, DDE_Tnp_Tn3, 1 hit
PF13700, DUF4158, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD2AQZ9_STRRD
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D2AQZ9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 9, 2010
Last sequence update: February 9, 2010
Last modified: October 7, 2020
This is version 44 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported, Transposable elementARBA annotation
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