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Protein
Submitted name:

Squalene synthase

Gene
N/A
Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Squalene synthaseImported
OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)Imported
Taxonomic identifieri4081 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei387 – 407HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

ExpressionAtlasiD0VFU8 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliD0VFU8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1459 Eukaryota
COG1562 LUCA

Family and domain databases

CDDicd00683 Trans_IPPS_HH, 1 hit
Gene3Di1.10.600.10, 1 hit
InterProiView protein in InterPro
IPR008949 Isoprenoid_synthase_dom_sf
IPR002060 Squ/phyt_synthse
IPR006449 Squal_synth-like
IPR019845 Squalene/phytoene_synthase_CS
IPR033904 Trans_IPPS_HH
PfamiView protein in Pfam
PF00494 SQS_PSY, 1 hit
SUPFAMiSSF48576 SSF48576, 1 hit
TIGRFAMsiTIGR01559 squal_synth, 1 hit
PROSITEiView protein in PROSITE
PS01044 SQUALEN_PHYTOEN_SYN_1, 1 hit
PS01045 SQUALEN_PHYTOEN_SYN_2, 1 hit

Sequencei

Sequence statusi: Complete.

D0VFU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGTLRAILKN PDDLYPLIKL KLAARHAEKQ IPPEPHWGFC YLMLQKVSRS
60 70 80 90 100
FALVIQQLPV ELRDAVCIFY LVLRALDTVE DDTSIPTDVK VPILISFHQH
110 120 130 140 150
VYDREWHFAC GTKEYKVLMD QFHHVSTAFL ELGKLYQQAI EDITMRMGAG
160 170 180 190 200
MAKFICKEVE TTDDYDEYCH YVAGLVGLGL SKLFHASGKE DLASDSLSNS
210 220 230 240 250
MGLFLQKTNI IRDYLEDINE VPKCRMFWPR EIWSKYVNKL EDLKYEENSV
260 270 280 290 300
KAVQCLNDMV TNALSHVEDC LTYMFNLHDP AIFRFCAIPQ VMAIGTLAMC
310 320 330 340 350
YDNIEVFRGV VKMRRGLTAK VIDRTKTMAD VYGAFFDFSC MLKSKVNNND
360 370 380 390 400
PNATKTLKRL DAILKTCRDS GTLNKRKSYI IRNEPNYSPV LIVVIFIILA
410
IILAQLFGSR S
Length:411
Mass (Da):47,062
Last modified:December 15, 2009 - v1
Checksum:i075F16117F710D13
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GU075687 mRNA Translation: ACY25092.1
UniGeneiLes.10553

Similar proteinsi

Entry informationi

Entry nameiD0VFU8_SOLLC
AccessioniPrimary (citable) accession number: D0VFU8
Entry historyiIntegrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: January 31, 2018
This is version 27 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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