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Protein
Submitted name:

Glycoside hydrolase family 43

Gene

Rmar_1068

Organism
Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolaseImported

Enzyme and pathway databases

BioCyciRMAR518766:G1GGK-1071-MONOMER

Protein family/group databases

CAZyiCBM6 Carbohydrate-Binding Module Family 6
GH43 Glycoside Hydrolase Family 43

Names & Taxonomyi

Protein namesi
Submitted name:
Glycoside hydrolase family 43Imported
Gene namesi
Ordered Locus Names:Rmar_1068Imported
OrganismiRhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis)Imported
Taxonomic identifieri518766 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeRhodothermus
Proteomesi
  • UP000002221 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei20 – 42HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi518766.Rmar_1068

Structurei

3D structure databases

ProteinModelPortaliD0MHK2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini562 – 696CBM6InterPro annotationAdd BLAST135

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105DSG Bacteria
COG3507 LUCA
OMAiWIYFSAN
OrthoDBiPOG091H06FO

Family and domain databases

Gene3Di2.115.10.20, 1 hit
2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR006584 Cellulose-bd_IV
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR006710 Glyco_hydro_43
IPR023296 Glyco_hydro_beta-prop_sf
IPR026444 Secre_tail
PfamiView protein in Pfam
PF03422 CBM_6, 1 hit
PF04616 Glyco_hydro_43, 1 hit
SMARTiView protein in SMART
SM00606 CBD_IV, 1 hit
SUPFAMiSSF49785 SSF49785, 1 hit
SSF49899 SSF49899, 1 hit
SSF75005 SSF75005, 1 hit
TIGRFAMsiTIGR04183 Por_Secre_tail, 1 hit
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit

Sequencei

Sequence statusi: Complete.

D0MHK2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MWIVILNRLR FKKASREWPV ILGGWLILAG WMALGFLVRA GYAQEPGRPV
60 70 80 90 100
YVNPVIPGDH PDPTLTRVGA YYYTSGSSFN VTPRIYRSTD LVHWEIVGRP
110 120 130 140 150
VSASWSLYGD VPAGGVWGGH MVYYQGLYWH FFGRGTGDRA MYFVTAHRPE
160 170 180 190 200
GPWGMPVRMN VPPGIPGLGV DNSIFIDEDG RWFLLSKNGP QNNYIVELGP
210 220 230 240 250
DGQPAGVVYD LTWINPDSAG NPYGWAEGPV MWKYQGYYYY SFAQHLVGNQ
260 270 280 290 300
YVMRSDTLSD DPADWEGPRL LFETVPDRYQ RVFRNPNHCS PAVTADDGTH
310 320 330 340 350
WMICHAYDQS GPGEEWRALG RQGLLVEVRY EEGWPVARFP TTEPVEGPAL
360 370 380 390 400
PSSGIPWAVP RSDFFDRSRL AVHWSLLGYT PEETYDLTER PGWLRLTPKG
410 420 430 440 450
GRTFPPTPGR NTVLQAAAER AYSLMTRVDF DPATTSDEAG LWIINGPETL
460 470 480 490 500
QARLCVTRSS EGERVVAFRF DTLAHSTPLP SEEPVWLKLE REGHELTASF
510 520 530 540 550
SLDGASWAPV AEKVNVARLD REQPASESGY DFNAFTGNQQ GLYVLGNTPA
560 570 580 590 600
YFDLYIYRDA YSRIPAQHPT NYNGVITSRN GLPAHANYLA GIHDGEWAMY
610 620 630 640 650
AGVEFGAPGS DYSRIPRQVV VTASSATGGG VVEVWVDALD TGQKIAEVPI
660 670 680 690 700
KSTGSWDVYQ DFTAEVVPVS GRHDVFLRFR GNPTETLFRI RSLLFEGQLT
710 720 730 740 750
ETATGPGAAV RPLLVTHYPN PVRDDVTFLV SLPRTGPVRL VLYNALGQQV
760 770 780 790
ATLIDAVRPA GRYPLRFTIK HLSPGLYFYQ LTTKDQVVTG QLIVISR
Length:797
Mass (Da):88,810
Last modified:December 15, 2009 - v1
Checksum:i5C4FD5F1102CBDB0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001807 Genomic DNA Translation: ACY47960.1
RefSeqiWP_012843572.1, NC_013501.1

Genome annotation databases

EnsemblBacteriaiACY47960; ACY47960; Rmar_1068
KEGGirmr:Rmar_1068

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001807 Genomic DNA Translation: ACY47960.1
RefSeqiWP_012843572.1, NC_013501.1

3D structure databases

ProteinModelPortaliD0MHK2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi518766.Rmar_1068

Protein family/group databases

CAZyiCBM6 Carbohydrate-Binding Module Family 6
GH43 Glycoside Hydrolase Family 43

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY47960; ACY47960; Rmar_1068
KEGGirmr:Rmar_1068

Phylogenomic databases

eggNOGiENOG4105DSG Bacteria
COG3507 LUCA
OMAiWIYFSAN
OrthoDBiPOG091H06FO

Enzyme and pathway databases

BioCyciRMAR518766:G1GGK-1071-MONOMER

Family and domain databases

Gene3Di2.115.10.20, 1 hit
2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR006584 Cellulose-bd_IV
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR006710 Glyco_hydro_43
IPR023296 Glyco_hydro_beta-prop_sf
IPR026444 Secre_tail
PfamiView protein in Pfam
PF03422 CBM_6, 1 hit
PF04616 Glyco_hydro_43, 1 hit
SMARTiView protein in SMART
SM00606 CBD_IV, 1 hit
SUPFAMiSSF49785 SSF49785, 1 hit
SSF49899 SSF49899, 1 hit
SSF75005 SSF75005, 1 hit
TIGRFAMsiTIGR04183 Por_Secre_tail, 1 hit
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD0MHK2_RHOM4
AccessioniPrimary (citable) accession number: D0MHK2
Entry historyiIntegrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: February 28, 2018
This is version 57 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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