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Entry version 66 (29 Sep 2021)
Sequence version 1 (24 Nov 2009)
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Protein

Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase

Gene

VIOR3934_06669

Organism
Vibrio orientalis CIP 102891 = ATCC 33934
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

In eubacteria ppGpp (guanosine 3'-diphosphate 5'-diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.

UniRule annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: ppGpp biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes ppGpp from GDP.ARBA annotation This subpathway is part of the pathway ppGpp biosynthesis, which is itself part of Purine metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes ppGpp from GDP, the pathway ppGpp biosynthesis and in Purine metabolism.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolaseImported

Enzyme and pathway databases

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00908;UER00886

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseARBA annotation (EC:3.1.7.2ARBA annotation)
Alternative name(s):
Penta-phosphate guanosine-3'-pyrophosphohydrolaseARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:VIOR3934_06669Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVibrio orientalis CIP 102891 = ATCC 33934Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri675816 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrioVibrio oreintalis group
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002817 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
675816.VIA_000566

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini45 – 144HDInterPro annotationAdd BLAST100
Domaini387 – 448TGSInterPro annotationAdd BLAST62
Domaini634 – 708ACTInterPro annotationAdd BLAST75

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili68 – 88Sequence analysisAdd BLAST21

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RelA/SpoT family.ARBA annotation
Belongs to the relA/spoT family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG0317, Bacteria

Database of Orthologous Groups

More...
OrthoDBi
204079at2

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00077, HDc, 1 hit
cd05399, NT_Rel-Spo_like, 1 hit
cd01668, TGS_RSH, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.10.20.30, 1 hit
3.30.460.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002912, ACT_dom
IPR012675, Beta-grasp_dom_sf
IPR003607, HD/PDEase_dom
IPR006674, HD_domain
IPR043519, NT_sf
IPR004811, RelA/Spo_fam
IPR007685, RelA_SpoT
IPR004095, TGS
IPR012676, TGS-like
IPR033655, TGS_RelA

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13291, ACT_4, 1 hit
PF04607, RelA_SpoT, 1 hit
PF02824, TGS, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00471, HDc, 1 hit
SM00954, RelA_SpoT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF81271, SSF81271, 1 hit
SSF81301, SSF81301, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00691, spoT_relA, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51671, ACT, 1 hit
PS51831, HD, 1 hit
PS51880, TGS, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C9QDK1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MYLFDSLKDV AQEYLTEPQI EALRQSYVVA KDAHEGQTRS SGEPYIIHPV
60 70 80 90 100
AVARILAEMR LDIETLQAAL LHDVIEDTEV TKEELEAQFG NTVAELVDGV
110 120 130 140 150
SKLDKLKFRD RKEAQAENFR KMVLAMVQDI RVILIKLADR THNMRTLGAL
160 170 180 190 200
RPDKKRRIAR ETLEIYSPLA HRLGIHNIKT ELEELGFEAL YPNRYRVLKE
210 220 230 240 250
VVRAARGNRK EMIQRIHDEI EGRLEEVGLK ARVFGREKNL FSIYNKMKTK
260 270 280 290 300
EQRFHTIMDI YAFRVVVDDA DTCYRVLGQV HSLYKPRPGR MKDYIAVPKA
310 320 330 340 350
NGYQSIHTSM VGPHGVPVEV QIRTEDMDQM ADKGVAAHWS YKGTGERTGT
360 370 380 390 400
TAQVKAQRWM QSLLELQQSA GNSFEFIENV KSDLFPDEIY VFTPKGRIVE
410 420 430 440 450
LPVGATAVDF AYAVHTDVGN TCVGARVDRN PYPLSKSLKN GQTIEIISAP
460 470 480 490 500
GARPNAAWLN YVVTSRARTK IRQVLKTMRR EESITLGRRL LNHALGELSL
510 520 530 540 550
SDISEENINH VLSDLKIDSI DDLLADIGLG ELMSIVIARR LLGDADELTE
560 570 580 590 600
VEGSSDTDSN KKKLPIRGAE GILLTFANCC HPIPDDHIIA HVSPGRGLVV
610 620 630 640 650
HREMCPNVRG YQKEPDKYMA VEWSEDYDKE FITEVTVDVQ NRQGALAELT
660 670 680 690 700
NVISKTGSNI HGLSTEERDG RLYTVTVLLT TKDRVHLAGI MRKIKAMPHT

LKVRRRKN
Length:708
Mass (Da):80,103
Last modified:November 24, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5F40F81F8E569D38
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AFWH01000014 Genomic DNA Translation: EGU52165.1

NCBI Reference Sequences

More...
RefSeqi
WP_004410884.1, NZ_AFWH01000014.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
EGU52165; EGU52165; VIOR3934_06669

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|675816.5.peg.1129

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AFWH01000014 Genomic DNA Translation: EGU52165.1
RefSeqiWP_004410884.1, NZ_AFWH01000014.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi675816.VIA_000566

Genome annotation databases

EnsemblBacteriaiEGU52165; EGU52165; VIOR3934_06669
PATRICifig|675816.5.peg.1129

Phylogenomic databases

eggNOGiCOG0317, Bacteria
OrthoDBi204079at2

Enzyme and pathway databases

UniPathwayiUPA00908;UER00886

Family and domain databases

CDDicd00077, HDc, 1 hit
cd05399, NT_Rel-Spo_like, 1 hit
cd01668, TGS_RSH, 1 hit
Gene3Di3.10.20.30, 1 hit
3.30.460.10, 1 hit
InterProiView protein in InterPro
IPR002912, ACT_dom
IPR012675, Beta-grasp_dom_sf
IPR003607, HD/PDEase_dom
IPR006674, HD_domain
IPR043519, NT_sf
IPR004811, RelA/Spo_fam
IPR007685, RelA_SpoT
IPR004095, TGS
IPR012676, TGS-like
IPR033655, TGS_RelA
PfamiView protein in Pfam
PF13291, ACT_4, 1 hit
PF04607, RelA_SpoT, 1 hit
PF02824, TGS, 1 hit
SMARTiView protein in SMART
SM00471, HDc, 1 hit
SM00954, RelA_SpoT, 1 hit
SUPFAMiSSF81271, SSF81271, 1 hit
SSF81301, SSF81301, 1 hit
TIGRFAMsiTIGR00691, spoT_relA, 1 hit
PROSITEiView protein in PROSITE
PS51671, ACT, 1 hit
PS51831, HD, 1 hit
PS51880, TGS, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC9QDK1_VIBOR
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C9QDK1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: September 29, 2021
This is version 66 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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