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Protein
Submitted name:

Clarin-1

Gene

CLRN1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Clarin-1Imported
Gene namesi
Name:CLRN1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 3

Organism-specific databases

EuPathDBiHostDB:ENSG00000163646.10
HGNCiHGNC:12605 CLRN1

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000163646

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_501534512120 – 177Sequence analysisAdd BLAST158

Expressioni

Gene expression databases

BgeeiENSG00000163646 Expressed in 32 organ(s), highest expression level in adrenal tissue
ExpressionAtlasiC9JYI2 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliC9JYI2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

GeneTreeiENSGT00850000132319
HOGENOMiHOG000060265

Family and domain databases

InterProiView protein in InterPro
IPR026748 Clarin
PANTHERiPTHR31548 PTHR31548, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

C9JYI2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
IFCMAGVFSF ACALGVVTAL GTPLWIKATV LCKTGALLVN ASGQELDKFM
60 70 80 90 100
GEMQYGLFHG EGVRQCGLGA RPFRFSCYFL DPFMGLPTGV PHLLSLPCST
110 120 130 140 150
SCRREHTSER VQEPAGCFSA VRSKLHAGPA AATSFSRFAQ SNPSEHPRQC
160 170
HSLLCHPYCV NHGGDSLLHV QCFWKTF
Length:177
Mass (Da):19,259
Last modified:June 20, 2018 - v2
Checksum:i7BD72783BDE01ABB
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
P58418CLRN1_HUMAN
Clarin-1
CLRN1 USH3A
232Annotation score:
E1ACV0E1ACV0_HUMAN
Clarin-1 transcript variant 8
CLRN1
48Annotation score:
A0A2R8Y8A4A0A2R8Y8A4_HUMAN
Clarin-1
CLRN1
49Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC020636 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000468836; ENSP00000419892; ENSG00000163646
UCSCiuc062pbj.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC020636 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliC9JYI2
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000468836; ENSP00000419892; ENSG00000163646
UCSCiuc062pbj.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000163646.10
HGNCiHGNC:12605 CLRN1
OpenTargetsiENSG00000163646
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00850000132319
HOGENOMiHOG000060265

Gene expression databases

BgeeiENSG00000163646 Expressed in 32 organ(s), highest expression level in adrenal tissue
ExpressionAtlasiC9JYI2 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR026748 Clarin
PANTHERiPTHR31548 PTHR31548, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiC9JYI2_HUMAN
AccessioniPrimary (citable) accession number: C9JYI2
Entry historyiIntegrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: June 20, 2018
Last modified: September 12, 2018
This is version 41 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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