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Protein
Submitted name:

Syncoilin

Gene

SYNC

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
SyncoilinImported
Gene namesi
Name:SYNCImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

EuPathDBiHostDB:ENSG00000162520.14
HGNCiHGNC:28897 SYNC

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000162520

PTM / Processingi

Proteomic databases

MaxQBiC9JTN4
PeptideAtlasiC9JTN4

Expressioni

Gene expression databases

BgeeiENSG00000162520 Expressed in 206 organ(s), highest expression level in biceps brachii
ExpressionAtlasiC9JTN4 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliC9JTN4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410IKIK Eukaryota
ENOG410Y2YI LUCA
GeneTreeiENSGT00390000018108

Family and domain databases

InterProiView protein in InterPro
IPR001664 IF
IPR027702 Syncoilin
PANTHERiPTHR23239 PTHR23239, 1 hit
PTHR23239:SF216 PTHR23239:SF216, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

C9JTN4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQPDEALHVE EPGNPEETVC VEETTEPDRI QFVEGPVEPG KPTSPEHVVY
60 70
EGETVTRAEK SNPEESLRAE
Length:70
Mass (Da):7,787
Last modified:November 3, 2009 - v1
Checksum:i01FDE8E5D7A39953
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9H7C4SYNCI_HUMAN
Syncoilin
SYNC SYNC1
482Annotation score:
C9JSS1C9JSS1_HUMAN
Syncoilin
SYNC
89Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei70Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC114489 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000426909; ENSP00000387594; ENSG00000162520
UCSCiuc057emh.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC114489 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliC9JTN4
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiC9JTN4
PeptideAtlasiC9JTN4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000426909; ENSP00000387594; ENSG00000162520
UCSCiuc057emh.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000162520.14
HGNCiHGNC:28897 SYNC
OpenTargetsiENSG00000162520
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IKIK Eukaryota
ENOG410Y2YI LUCA
GeneTreeiENSGT00390000018108

Miscellaneous databases

ChiTaRSiSYNC human

Gene expression databases

BgeeiENSG00000162520 Expressed in 206 organ(s), highest expression level in biceps brachii
ExpressionAtlasiC9JTN4 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR001664 IF
IPR027702 Syncoilin
PANTHERiPTHR23239 PTHR23239, 1 hit
PTHR23239:SF216 PTHR23239:SF216, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiC9JTN4_HUMAN
AccessioniPrimary (citable) accession number: C9JTN4
Entry historyiIntegrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: September 12, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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