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Protein
Submitted name:

Protein RFT1 homolog

Gene

RFT1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
Protein RFT1 homologImported
Gene namesi
Name:RFT1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 3

Organism-specific databases

EuPathDBiHostDB:ENSG00000163933.9
HGNCiHGNC:30220 RFT1

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei18 – 37HelicalSequence analysisAdd BLAST20
Transmembranei43 – 62HelicalSequence analysisAdd BLAST20
Transmembranei83 – 107HelicalSequence analysisAdd BLAST25
Transmembranei119 – 141HelicalSequence analysisAdd BLAST23
Transmembranei153 – 174HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000163933

PTM / Processingi

Proteomic databases

PeptideAtlasiC9JP01
PRIDEiC9JP01

Expressioni

Gene expression databases

BgeeiENSG00000163933 Expressed in 155 organ(s), highest expression level in testis
ExpressionAtlasiC9JP01 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliC9JP01
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

GeneTreeiENSGT00390000011390
HOGENOMiHOG000007364

Family and domain databases

InterProiView protein in InterPro
IPR007594 RFT1
PANTHERiPTHR13117 PTHR13117, 2 hits
PfamiView protein in Pfam
PF04506 Rft-1, 2 hits

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

C9JP01-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGSQEVLGHA ARLASSGLLL QVLFRLITFV LNAFILRFLS KEIVGVVNVR
60 70 80 90 100
LTLLYSTTLF LAREAFRRAC LSGGTQRDWS QTLNLLWLTV PLGVFWSLFL
110 120 130 140 150
GWIWLQLLEV PDPNVVPHYA TGVVLFGLSA VVELLGEPFW VLAQAHMFVK
160 170 180 190 200
LKVIAESLSV ILKSVLTAFL VLWLPHWGLY IFSLAQAFIN WKEAKLTWSF
210 220 230 240 250
FKQSFLKQIL TEGERYVMTF LNVLNFGDQG VYDIVNNLGS LVARLIFQPI
260 270 280 290
EESFYIFFAK VLERGKDATL QKQEDVAVAA AVLESLLKLA L
Length:291
Mass (Da):32,871
Last modified:October 5, 2016 - v8
Checksum:i439E4ABA213F0548
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q96AA3RFT1_HUMAN
Protein RFT1 homolog
RFT1
541Annotation score:
B5MDE0B5MDE0_HUMAN
Protein RFT1 homolog
RFT1 hCG_17562
502Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei291Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC096887 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000467048; ENSP00000420325; ENSG00000163933
UCSCiuc062krt.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC096887 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliC9JP01
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PeptideAtlasiC9JP01
PRIDEiC9JP01

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000467048; ENSP00000420325; ENSG00000163933
UCSCiuc062krt.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000163933.9
HGNCiHGNC:30220 RFT1
OpenTargetsiENSG00000163933
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00390000011390
HOGENOMiHOG000007364

Miscellaneous databases

ChiTaRSiRFT1 human

Gene expression databases

BgeeiENSG00000163933 Expressed in 155 organ(s), highest expression level in testis
ExpressionAtlasiC9JP01 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR007594 RFT1
PANTHERiPTHR13117 PTHR13117, 2 hits
PfamiView protein in Pfam
PF04506 Rft-1, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiC9JP01_HUMAN
AccessioniPrimary (citable) accession number: C9JP01
Entry historyiIntegrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: October 5, 2016
Last modified: September 12, 2018
This is version 54 of the entry and version 8 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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