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Protein
Submitted name:

Apolipoprotein D

Gene

APOD

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Apolipoprotein DImported
Gene namesi
Name:APODImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 3

Organism-specific databases

EuPathDBiHostDB:ENSG00000189058.8
HGNCiHGNC:612 APOD

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000189058

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 48Sequence analysisAdd BLAST48
ChainiPRO_500299654749 – 215Sequence analysisAdd BLAST167

Proteomic databases

MaxQBiC9JF17
PeptideAtlasiC9JF17
PRIDEiC9JF17

Expressioni

Gene expression databases

BgeeiENSG00000189058 Expressed in 220 organ(s), highest expression level in olfactory bulb
ExpressionAtlasiC9JF17 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliC9JF17
SMRiC9JF17
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini65 – 210Lipocln_cytosolic_FA-bd_domInterPro annotationAdd BLAST146

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG4824 Eukaryota
COG3040 LUCA
GeneTreeiENSGT00510000046981
HOGENOMiHOG000061525
OMAiCIYANYG
OrthoDBiEOG091G11BU
PhylomeDBiC9JF17

Family and domain databases

Gene3Di2.40.128.20, 1 hit
InterProiView protein in InterPro
IPR026222 ApoD_vertbrte
IPR002969 ApolipopD
IPR012674 Calycin
IPR022271 Lipocalin_ApoD
IPR022272 Lipocalin_CS
IPR000566 Lipocln_cytosolic_FA-bd_dom
PfamiView protein in Pfam
PF08212 Lipocalin_2, 1 hit
PIRSFiPIRSF036893 Lipocalin_ApoD, 1 hit
PRINTSiPR02058 APODVERTBRTE
PR01219 APOLIPOPROTD
SUPFAMiSSF50814 SSF50814, 1 hit
PROSITEiView protein in PROSITE
PS00213 LIPOCALIN, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

C9JF17-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFKQLSCISL PSSCDYSSRS LLQPPSPKMV MLLLLLSALA GLFGAAEGQA
60 70 80 90 100
FHLGKCPNPP VQENFDVNKY LGRWYEIEKI PTTFENGRCI QANYSLMENG
110 120 130 140 150
KIKVLNQELR ADGTVNQIEG EATPVNLTEP AKLEVKFSWF MPSAPYWILA
160 170 180 190 200
TDYENYALVY SCTCIIQLFH VDFAWILARN PNLPPETVDS LKNILTSNNI
210
DVKKMTVTDQ VNCPK
Length:215
Mass (Da):24,158
Last modified:November 3, 2009 - v1
Checksum:i618EEA0DBC3DB0E3
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
P05090APOD_HUMAN
Apolipoprotein D
APOD
189Annotation score:
C9JX71C9JX71_HUMAN
Apolipoprotein D
APOD
149Annotation score:
F8WBT9F8WBT9_HUMAN
Apolipoprotein D
APOD
108Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei215Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069213 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000421243; ENSP00000415235; ENSG00000189058
UCSCiuc062rrr.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069213 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliC9JF17
SMRiC9JF17
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiC9JF17
PeptideAtlasiC9JF17
PRIDEiC9JF17

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000421243; ENSP00000415235; ENSG00000189058
UCSCiuc062rrr.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000189058.8
HGNCiHGNC:612 APOD
OpenTargetsiENSG00000189058
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG4824 Eukaryota
COG3040 LUCA
GeneTreeiENSGT00510000046981
HOGENOMiHOG000061525
OMAiCIYANYG
OrthoDBiEOG091G11BU
PhylomeDBiC9JF17

Miscellaneous databases

ChiTaRSiAPOD human

Gene expression databases

BgeeiENSG00000189058 Expressed in 220 organ(s), highest expression level in olfactory bulb
ExpressionAtlasiC9JF17 baseline and differential

Family and domain databases

Gene3Di2.40.128.20, 1 hit
InterProiView protein in InterPro
IPR026222 ApoD_vertbrte
IPR002969 ApolipopD
IPR012674 Calycin
IPR022271 Lipocalin_ApoD
IPR022272 Lipocalin_CS
IPR000566 Lipocln_cytosolic_FA-bd_dom
PfamiView protein in Pfam
PF08212 Lipocalin_2, 1 hit
PIRSFiPIRSF036893 Lipocalin_ApoD, 1 hit
PRINTSiPR02058 APODVERTBRTE
PR01219 APOLIPOPROTD
SUPFAMiSSF50814 SSF50814, 1 hit
PROSITEiView protein in PROSITE
PS00213 LIPOCALIN, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiC9JF17_HUMAN
AccessioniPrimary (citable) accession number: C9JF17
Entry historyiIntegrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: September 12, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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