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Protein
Submitted name:

Semaphorin-3F

Gene

SEMA3F

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Semaphorin-3FImported
Gene namesi
Name:SEMA3FImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 3

Organism-specific databases

EuPathDBiHostDB:ENSG00000001617.11
HGNCiHGNC:10728 SEMA3F

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000001617

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_500841291719 – 379Sequence analysisAdd BLAST361

Proteomic databases

PeptideAtlasiC9J4H5
PRIDEiC9J4H5

Expressioni

Gene expression databases

BgeeiENSG00000001617 Expressed in 237 organ(s), highest expression level in cervix squamous epithelium
ExpressionAtlasiC9J4H5 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliC9J4H5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini31 – 379SemaInterPro annotationAdd BLAST349

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000118854
HOGENOMiHOG000039964

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR001627 Semap_dom
IPR036352 Semap_dom_sf
IPR027231 Semaphorin
IPR015943 WD40/YVTN_repeat-like_dom_sf
PANTHERiPTHR11036 PTHR11036, 2 hits
PfamiView protein in Pfam
PF01403 Sema, 1 hit
SMARTiView protein in SMART
SM00630 Sema, 1 hit
SUPFAMiSSF101912 SSF101912, 1 hit
PROSITEiView protein in PROSITE
PS51004 SEMA, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 5 potential isoforms that are computationally mapped.Show allAlign All

C9J4H5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLVAGLLLWA SLLTGAWPSF PTQDHLPATP RVRLSFKELK ATGTAHFFNF
60 70 80 90 100
LLNTTDYRIL LKDEDHDRMY VGSKDYVLSL DLHDINREPL IIHWAASPQR
110 120 130 140 150
IEECVLSGKD VNGECGNFVR LIQPWNRTHL YVCGTGAYNP MCTYVNRGRR
160 170 180 190 200
AQDYIFYLEP ERLESGKGKC PYDPKLDTAS ALINEELYAG VYIDFMGTDA
210 220 230 240 250
AIFRTLGKQT AMRTDQYNSR WLNDPSFIHA ELIPDSAERN DDKLYFFFRE
260 270 280 290 300
RSAEAPQSPA VYARIGRICL NDDGGHCCLV NKWSTFLKAR LVCSVPGEDG
310 320 330 340 350
IETHFDELQD VFVQQTQDVR NPVIYAVFTS SGSVFRGSAV CVYSMADIRM
360 370
VFNGPFAHKE GPNYQWMPFS GKMPYPRPG
Length:379
Mass (Da):43,079
Last modified:October 5, 2016 - v8
Checksum:i4E2D994A36880721
GO

Computationally mapped potential isoform sequencesi

There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q13275SEM3F_HUMAN
Semaphorin-3F
SEMA3F
785Annotation score:
C9J1V2C9J1V2_HUMAN
Semaphorin-3F
SEMA3F
264Annotation score:
C9IYS6C9IYS6_HUMAN
Semaphorin-3F
SEMA3F
92Annotation score:
C9JPG5C9JPG5_HUMAN
Semaphorin-3F
SEMA3F
686Annotation score:
H7C4A2H7C4A2_HUMAN
Semaphorin-3F
SEMA3F
147Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei379Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000063 Genomic DNA No translation available.
AC104450 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000450338; ENSP00000398399; ENSG00000001617
UCSCiuc062kbg.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000063 Genomic DNA No translation available.
AC104450 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliC9J4H5
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PeptideAtlasiC9J4H5
PRIDEiC9J4H5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000450338; ENSP00000398399; ENSG00000001617
UCSCiuc062kbg.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000001617.11
HGNCiHGNC:10728 SEMA3F
OpenTargetsiENSG00000001617
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00760000118854
HOGENOMiHOG000039964

Miscellaneous databases

ChiTaRSiSEMA3F human

Gene expression databases

BgeeiENSG00000001617 Expressed in 237 organ(s), highest expression level in cervix squamous epithelium
ExpressionAtlasiC9J4H5 baseline and differential

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR001627 Semap_dom
IPR036352 Semap_dom_sf
IPR027231 Semaphorin
IPR015943 WD40/YVTN_repeat-like_dom_sf
PANTHERiPTHR11036 PTHR11036, 2 hits
PfamiView protein in Pfam
PF01403 Sema, 1 hit
SMARTiView protein in SMART
SM00630 Sema, 1 hit
SUPFAMiSSF101912 SSF101912, 1 hit
PROSITEiView protein in PROSITE
PS51004 SEMA, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiC9J4H5_HUMAN
AccessioniPrimary (citable) accession number: C9J4H5
Entry historyiIntegrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: October 5, 2016
Last modified: September 12, 2018
This is version 64 of the entry and version 8 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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