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UniProtKB - C8XPA8 (POLG_BANV)

Entry version 84 (12 Aug 2020)
Sequence version 1 (03 Nov 2009)
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Protein

Genome polyprotein

Gene
N/A
Organism
Banzi virus (BANV)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Plays a role in virus budding by binding to the cell membrane and gathering the viral RNA into a nucleocapsid that forms the core of a mature virus particle. During virus entry, may induce genome penetration into the host cytoplasm after hemifusion induced by the surface proteins. Can migrate to the cell nucleus where it modulates host functions.By similarity
Inhibits RNA silencing by interfering with host Dicer.By similarity
Prevents premature fusion activity of envelope proteins in trans-Golgi by binding to envelope protein E at pH6.0. After virion release in extracellular space, gets dissociated from E dimers.By similarity
Acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is the only viral peptide matured by host furin in the trans-Golgi network probably to avoid catastrophic activation of the viral fusion activity in acidic Golgi compartment prior to virion release. prM-E cleavage is inefficient, and many virions are only partially matured. These uncleaved prM would play a role in immune evasion.By similarity
May play a role in virus budding. Exerts cytotoxic effects by activating a mitochondrial apoptotic pathway through M ectodomain. May display a viroporin activity.By similarity
Binds to host cell surface receptor and mediates fusion between viral and cellular membranes. Envelope protein is synthesized in the endoplasmic reticulum in the form of heterodimer with protein prM. They play a role in virion budding in the ER, and the newly formed immature particle is covered with 60 spikes composed of heterodimer between precursor prM and envelope protein E. The virion is transported to the Golgi apparatus where the low pH causes dissociation of PrM-E heterodimers and formation of E homodimers. prM-E cleavage is inefficient, and many virions are only partially matured. These uncleaved prM would play a role in immune evasion.By similarity
Involved in immune evasion, pathogenesis and viral replication. Once cleaved off the polyprotein, is targeted to three destinations: the viral replication cycle, the plasma membrane and the extracellular compartment. Essential for viral replication. Required for formation of the replication complex and recruitment of other non-structural proteins to the ER-derived membrane structures. Excreted as a hexameric lipoparticle that plays a role against host immune response. Antagonizing the complement function. Binds to the host macrophages and dendritic cells. Inhibits signal transduction originating from Toll-like receptor 3 (TLR3).By similarity
Component of the viral RNA replication complex that functions in virion assembly and antagonizes the host immune response.By similarity
Required cofactor for the serine protease function of NS3. May have membrane-destabilizing activity and form viroporins (By similarity).PROSITE-ProRule annotationBy similarity
Displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS2B, performs its autocleavage and cleaves the polyprotein at dibasic sites in the cytoplasm: C-prM, NS2A-NS2B, NS2B-NS3, NS3-NS4A, NS4A-2K and NS4B-NS5. NS3 RNA helicase binds RNA and unwinds dsRNA in the 3' to 5' direction. Also plays a role in virus assembly (By similarity).PROSITE-ProRule annotationBy similarity
Regulates the ATPase activity of the NS3 helicase activity. NS4A allows NS3 helicase to conserve energy during unwinding.By similarity
Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.By similarity
Induces the formation of ER-derived membrane vesicles where the viral replication takes place. Inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway.By similarity
Replicates the viral (+) and (-) RNA genome, and performs the capping of genomes in the cytoplasm. NS5 methylates viral RNA cap at guanine N-7 and ribose 2'-O positions (By similarity). Besides its role in RNA genome replication, also prevents the establishment of cellular antiviral state by blocking the interferon-alpha/beta (IFN-alpha/beta) signaling pathway. IFN-I induces binding of NS5 to host IFN-activated transcription factor STAT2, preventing its transcriptional activity. Host TRIM23 is the E3 ligase that interacts with and polyubiquitinates NS5 to promote its binding to STAT2 and trigger IFN-I signaling inhibition.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Selective hydrolysis of -Xaa-Xaa-|-Yaa- bonds in which each of the Xaa can be either Arg or Lys and Yaa can be either Ser or Ala. EC:3.4.21.91

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1521Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1
Active sitei1545Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1
Active sitei1606Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei1927Involved in NS3 ATPase and RTPase activitiesBy similarity1
Sitei1930Involved in NS3 ATPase and RTPase activitiesBy similarity1
Sitei2501mRNA cap bindingPROSITE-ProRule annotation1
Sitei2504mRNA cap binding; via carbonyl oxygenPROSITE-ProRule annotation1
Sitei2505mRNA cap bindingPROSITE-ProRule annotation1
Sitei2507mRNA cap binding; via carbonyl oxygenPROSITE-ProRule annotation1
Sitei2512mRNA cap bindingPROSITE-ProRule annotation1
Sitei2516mRNA cap bindingPROSITE-ProRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei2544S-adenosyl-L-methioninePROSITE-ProRule annotation1
Active sitei2549For 2'-O-MTase activityBy similarity1
Sitei2549Essential for 2'-O-methyltransferase activityPROSITE-ProRule annotation1
Binding sitei2574S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation1
Binding sitei2575S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation1
Binding sitei2592S-adenosyl-L-methioninePROSITE-ProRule annotation1
Binding sitei2593S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation1
Binding sitei2619S-adenosyl-L-methioninePROSITE-ProRule annotation1
Binding sitei2620S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation1
Active sitei2634For 2'-O-MTase activityBy similarity1
Sitei2634Essential for 2'-O-methyltransferase and N-7 methyltransferase activityPROSITE-ProRule annotation1
Binding sitei2635S-adenosyl-L-methioninePROSITE-ProRule annotation1
Sitei2638mRNA cap bindingPROSITE-ProRule annotation1
Active sitei2670For 2'-O-MTase activityBy similarity1
Sitei2670Essential for 2'-O-methyltransferase activityPROSITE-ProRule annotation1
Sitei2701mRNA cap bindingPROSITE-ProRule annotation1
Sitei2703mRNA cap bindingPROSITE-ProRule annotation1
Active sitei2706For 2'-O-MTase activityBy similarity1
Sitei2706Essential for 2'-O-methyltransferase activityPROSITE-ProRule annotation1
Binding sitei2708S-adenosyl-L-methioninePROSITE-ProRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi2927Zinc 1By similarity1
Metal bindingi2931Zinc 1; via tele nitrogenBy similarity1
Metal bindingi2936Zinc 1By similarity1
Metal bindingi2939Zinc 1By similarity1
Metal bindingi3204Zinc 2; via tele nitrogenBy similarity1
Metal bindingi3220Zinc 2By similarity1
Metal bindingi3339Zinc 2By similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi1666 – 1673ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase, Methyltransferase, Nucleotidyltransferase, Protease, RNA-binding, RNA-directed RNA polymerase, Serine protease, Suppressor of RNA silencing, Transferase
Biological processActivation of host autophagy by virus, Fusion of virus membrane with host endosomal membrane, Fusion of virus membrane with host membrane, Host-virus interaction, Inhibition of host innate immune response by virus, Inhibition of host interferon signaling pathway by virus, Inhibition of host STAT1 by virus, Inhibition of host STAT2 by virus, mRNA capping, mRNA processing, Viral attachment to host cell, Viral immunoevasion, Viral penetration into host cytoplasm, Viral RNA replication, Virus entry into host cell
LigandATP-binding, GTP-binding, Metal-binding, Nucleotide-binding, S-adenosyl-L-methionine, Zinc

Protein family/group databases

MEROPS protease database

More...MEROPSi		S07.001

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Genome polyprotein
Cleaved into the following 14 chains:
Capsid protein C
Alternative name(s):
Core protein
Protein prM
Peptide pr
Small envelope protein M
Alternative name(s):
Matrix protein
Envelope protein E
Non-structural protein 1
Short name:
NS1
Non-structural protein 2A
Short name:
NS2A
Non-structural protein 2A-alpha
Short name:
NS2A-alpha
Serine protease subunit NS2B
Alternative name(s):
Flavivirin protease NS2B regulatory subunit
Non-structural protein 2B
Serine protease NS3 (EC:3.4.21.91, EC:3.6.1.15, EC:3.6.4.13)
Alternative name(s):
Flavivirin protease NS3 catalytic subunit
Non-structural protein 3
Non-structural protein 4A
Short name:
NS4A
Peptide 2k
Non-structural protein 4B
Short name:
NS4B
RNA-directed RNA polymerase NS5 (EC:2.1.1.56PROSITE-ProRule annotation, EC:2.1.1.57PROSITE-ProRule annotation, EC:2.7.7.48PROSITE-ProRule annotation)
Alternative name(s):
Non-structural protein 5
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBanzi virus (BANV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri38837 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Riboviria › Flaviviridae › Flavivirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiCulicidae (mosquitos) [TaxID: 7157]
Homo sapiens (Human) [TaxID: 9606]
Rodentia [TaxID: 9989]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000140353 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 91CytoplasmicSequence analysisAdd BLAST91
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei92 – 112HelicalSequence analysisAdd BLAST21
Topological domaini113 – 231ExtracellularSequence analysisAdd BLAST119
Transmembranei232 – 252HelicalSequence analysisAdd BLAST21
Topological domaini253 – 257CytoplasmicSequence analysis5
Transmembranei258 – 272HelicalCuratedAdd BLAST15
Topological domaini273 – 713ExtracellularSequence analysisAdd BLAST441
Transmembranei714 – 734HelicalSequence analysisAdd BLAST21
Topological domaini735 – 745CytoplasmicSequence analysisAdd BLAST11
Transmembranei746 – 763HelicalCuratedAdd BLAST18
Topological domaini764 – 1112ExtracellularSequence analysisAdd BLAST349
Transmembranei1113 – 1133HelicalSequence analysisAdd BLAST21
Topological domaini1134 – 1186CytoplasmicSequence analysisAdd BLAST53
Transmembranei1187 – 1207HelicalSequence analysisAdd BLAST21
Topological domaini1208 – 1283LumenalSequence analysisAdd BLAST76
Transmembranei1284 – 1304HelicalSequence analysisAdd BLAST21
Topological domaini1305 – 1341CytoplasmicSequence analysisAdd BLAST37
Transmembranei1342 – 1362HelicalSequence analysisAdd BLAST21
Topological domaini1363 – 1365LumenalSequence analysis3
Transmembranei1366 – 1386HelicalSequence analysisAdd BLAST21
Topological domaini1387 – 1438CytoplasmicSequence analysisAdd BLAST52
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a region that is buried within a membrane, but does not cross it.<p><a href='/help/intramem' target='_top'>More...</a></p>Intramembranei1439 – 1459HelicalSequence analysisAdd BLAST21
Topological domaini1460 – 2137CytoplasmicSequence analysisAdd BLAST678
Transmembranei2138 – 2158HelicalSequence analysisAdd BLAST21
Topological domaini2159 – 2168LumenalSequence analysis10
Intramembranei2169 – 2184HelicalCuratedAdd BLAST16
Topological domaini2185LumenalSequence analysis1
Transmembranei2186 – 2206HelicalSequence analysisAdd BLAST21
Topological domaini2207 – 2221CytoplasmicSequence analysisAdd BLAST15
Transmembranei2222 – 2236Helical; Note=Signal for NS4BCuratedAdd BLAST15
Topological domaini2237 – 2275LumenalSequence analysisAdd BLAST39
Intramembranei2276 – 2296HelicalSequence analysisAdd BLAST21
Topological domaini2297 – 2344LumenalSequence analysisAdd BLAST48
Transmembranei2345 – 2365HelicalSequence analysisAdd BLAST21
Topological domaini2366 – 2408CytoplasmicSequence analysisAdd BLAST43
Transmembranei2409 – 2429HelicalSequence analysisAdd BLAST21
Topological domaini2430 – 2457LumenalSequence analysisAdd BLAST28
Transmembranei2458 – 2478HelicalSequence analysisAdd BLAST21
Topological domaini2479 – 3393CytoplasmicSequence analysisAdd BLAST915

GO - Cellular componenti

Complete GO annotation on QuickGO ...

Keywords - Cellular componenti

Capsid protein, Host cytoplasm, Host endoplasmic reticulum, Host membrane, Host nucleus, Membrane, Secreted, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004414391 – 3393Genome polyproteinAdd BLAST3393
ChainiPRO_00004414401 – 90Capsid protein CBy similarityAdd BLAST90
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section describes a propeptide, which is a part of a protein that is cleaved during maturation or activation. Once cleaved, a propeptide generally has no independent biological function.<p><a href='/help/propep' target='_top'>More...</a></p>PropeptideiPRO_000044144191 – 108ER anchor for the capsid protein C, removed in mature form by serine protease NS3By similarityAdd BLAST18
ChainiPRO_0000441442109 – 272Protein prMBy similarityAdd BLAST164
ChainiPRO_0000441443109 – 197Peptide prBy similarityAdd BLAST89
ChainiPRO_0000441444198 – 272Small envelope protein MBy similarityAdd BLAST75
ChainiPRO_0000441445273 – 763Envelope protein EBy similarityAdd BLAST491
ChainiPRO_0000441446764 – 1115Non-structural protein 1By similarityAdd BLAST352
ChainiPRO_00004414471116 – 1340Non-structural protein 2ABy similarityAdd BLAST225
ChainiPRO_00004414481116 – 1306Non-structural protein 2A-alphaBy similarityAdd BLAST191
ChainiPRO_00004414491341 – 1469Serine protease subunit NS2BBy similarityAdd BLAST129
ChainiPRO_00004414501470 – 2089Serine protease NS3By similarityAdd BLAST620
ChainiPRO_00004414512090 – 2213Non-structural protein 4ABy similarityAdd BLAST124
<p>This subsection of the 'PTM / Processing' section describes the position and length of an active peptide in the mature protein.<p><a href='/help/peptide' target='_top'>More...</a></p>PeptideiPRO_00004414522214 – 2236Peptide 2kBy similarityAdd BLAST23
ChainiPRO_00004414532237 – 2488Non-structural protein 4BBy similarityAdd BLAST252
ChainiPRO_00004414542489 – 3393RNA-directed RNA polymerase NS5By similarityAdd BLAST905

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi121N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi137N-linked (GlcNAc...) asparagine; by hostSequence analysis1
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi275 ↔ 302By similarity
Disulfide bondi346 ↔ 377By similarity
Disulfide bondi364 ↔ 388By similarity
Disulfide bondi453 ↔ 553By similarity
Disulfide bondi570 ↔ 600By similarity
Disulfide bondi767 ↔ 778By similarity
Disulfide bondi818 ↔ 905By similarity
Glycosylationi893N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Disulfide bondi941 ↔ 986By similarity
Glycosylationi970N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Disulfide bondi1043 ↔ 1092By similarity
Disulfide bondi1054 ↔ 1076By similarity
Disulfide bondi1054 ↔ 1075By similarity
Disulfide bondi1075 ↔ 1079By similarity
Disulfide bondi1076 ↔ 1079By similarity
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei2544PhosphoserineBy similarity1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Specific enzymatic cleavages in vivo yield mature proteins. The nascent capsid protein C contains a C-terminal hydrophobic domain that act as a signal sequence for translocation of prM into the lumen of the ER. Mature capsid protein C is cleaved at a site upstream of this hydrophobic domain by NS3. prM is cleaved in post-Golgi vesicles by a host furin, releasing the mature small envelope protein M, and peptide pr. Non-structural protein 2A-alpha, a C-terminally truncated form of non-structural protein 2A, results from partial cleavage by NS3. Specific enzymatic cleavages in vivo yield mature proteins peptide 2K acts as a signal sequence and is removed from the N-terminus of NS4B by the host signal peptidase in the ER lumen. Signal cleavage at the 2K-4B site requires a prior NS3 protease-mediated cleavage at the 4A-2K site.By similarity
Cleaved in post-Golgi vesicles by a host furin, releasing the mature small envelope protein M, and peptide pr. This cleavage is incomplete as up to 30% of viral particles still carry uncleaved prM.By similarity
N-glycosylated.By similarity
N-glycosylated. The excreted form is glycosylated and this is required for efficient secretion of the protein from infected cells.By similarity
Polyubiquitinated; ubiquitination is probably mediated by host TRIM23 and is prerequisite for NS5-STAT2 interaction. NS5 is not ISGylated or sumoylated.By similarity
Phosphorylated on serines residues. This phosphorylation may trigger NS5 nuclear localization.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei90 – 91Cleavage; by viral protease NS3By similarity2
Sitei108 – 109Cleavage; by host signal peptidaseBy similarity2
Sitei197 – 198Cleavage; by host furinBy similarity2
Sitei272 – 273Cleavage; by host signal peptidaseBy similarity2
Sitei763 – 764Cleavage; by host signal peptidaseBy similarity2
Sitei1115 – 1116Cleavage; by hostBy similarity2
Sitei1340 – 1341Cleavage; by viral protease NS3By similarity2
Sitei1469 – 1470Cleavage; by autolysisBy similarity2
Sitei2089 – 2090Cleavage; by autolysisBy similarity2
Sitei2213 – 2214Cleavage; by viral protease NS3By similarity2
Sitei2236 – 2237Cleavage; by host signal peptidaseBy similarity2
Sitei2488 – 2489Cleavage; by viral protease NS3By similarity2

Keywords - PTMi

Cleavage on pair of basic residues, Disulfide bond, Glycoprotein, Phosphoprotein, Ubl conjugation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer.

Interacts (via N-terminus) with host EXOC1 (via C-terminus); this interaction results in EXOC1 degradation through the proteasome degradation pathway.

By similarity

Forms heterodimers with envelope protein E in the endoplasmic reticulum and Golgi.

By similarity

Homodimer; in the endoplasmic reticulum and Golgi.

Interacts with protein prM.

Interacts with non-structural protein 1.

By similarity

Homodimer; Homohexamer when secreted.

Interacts with envelope protein E.

By similarity

Interacts (via N-terminus) with serine protease NS3.

By similarity

Forms a heterodimer with serine protease NS3. May form homooligomers.

By similarity

Forms a heterodimer with NS2B.

Interacts with non-structural protein 2A (via N-terminus).

Interacts with NS4B.

Interacts with unphosphorylated RNA-directed RNA polymerase NS5; this interaction stimulates RNA-directed RNA polymerase NS5 guanylyltransferase activity. NS3 interacts with host PDCD6IP; this interaction contributes to virion release.

By similarity

Interacts with serine protease NS3.

By similarity

Homodimer.

Interacts with host STAT2; this interaction prevents the establishment of cellular antiviral state.

Interacts with host TRIM23; this interaction leads to NS5 ubiquitination.

By similarity

GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		C8XPA8

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1470 – 1649Peptidase S7PROSITE-ProRule annotationAdd BLAST180
Domaini1653 – 1809Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST157
Domaini1804 – 1984Helicase C-terminalPROSITE-ProRule annotationAdd BLAST181
Domaini2489 – 2753mRNA cap 0-1 NS5-type MTPROSITE-ProRule annotationAdd BLAST265
Domaini3017 – 3169RdRp catalyticPROSITE-ProRule annotationAdd BLAST153

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni28 – 60Hydrophobic; homodimerization of capsid protein CBy similarityAdd BLAST33
Regioni370 – 383Fusion peptideBy similarityAdd BLAST14
Regioni1393 – 1432Interacts with and activates NS3 proteasePROSITE-ProRule annotationAdd BLAST40
Regioni1657 – 1660Important for RNA-bindingBy similarity4

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi1757 – 1760DEAH boxPROSITE-ProRule annotation4
Motifi2860 – 2893Nuclear localization signalBy similarityAdd BLAST34

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The transmembrane domains of the small envelope protein M and envelope protein E contain an endoplasmic reticulum retention signal.By similarity

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

In the N-terminal section; belongs to the class I-like SAM-binding methyltransferase superfamily. mRNA cap 0-1 NS5-type methyltransferase family.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

Conserved Domains Database

More...CDDi		cd12149, Flavi_E_C, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.8.970, 1 hit
1.20.1280.260, 1 hit
2.40.10.10, 1 hit
2.60.260.50, 1 hit
2.60.40.350, 1 hit
2.60.98.10, 1 hit
3.30.387.10, 1 hit
3.30.67.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR011492, DEAD_Flavivir
IPR043502, DNA/RNA_pol_sf
IPR000069, Env_glycoprot_M_flavivir
IPR038302, Env_glycoprot_M_sf_flavivir
IPR013755, Flav_gly_cen_dom_subdom1
IPR001122, Flavi_capsidC
IPR027287, Flavi_E_Ig-like
IPR026470, Flavi_E_Stem/Anchor_dom
IPR038345, Flavi_E_Stem/Anchor_dom_sf
IPR001157, Flavi_NS1
IPR000752, Flavi_NS2A
IPR000487, Flavi_NS2B
IPR000404, Flavi_NS4A
IPR001528, Flavi_NS4B
IPR002535, Flavi_propep
IPR038688, Flavi_propep_sf
IPR000336, Flavivir/Alphavir_Ig-like_sf
IPR001850, Flavivirus_NS3_S7
IPR014412, Gen_Poly_FLV
IPR011998, Glycoprot_cen/dimer
IPR036253, Glycoprot_cen/dimer_sf
IPR038055, Glycoprot_E_dimer_dom
IPR013756, GlyE_cen_dom_subdom2
IPR014001, Helicase_ATP-bd
IPR001650, Helicase_C
IPR014756, Ig_E-set
IPR026490, mRNA_cap_0/1_MeTrfase
IPR027417, P-loop_NTPase
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR000208, RNA-dir_pol_flavivirus
IPR007094, RNA-dir_pol_PSvirus
IPR002877, rRNA_MeTrfase_FtsJ_dom
IPR029063, SAM-dependent_MTases

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01003, Flavi_capsid, 1 hit
PF07652, Flavi_DEAD, 1 hit
PF02832, Flavi_glycop_C, 1 hit
PF00869, Flavi_glycoprot, 1 hit
PF01004, Flavi_M, 1 hit
PF00948, Flavi_NS1, 1 hit
PF01005, Flavi_NS2A, 1 hit
PF01002, Flavi_NS2B, 1 hit
PF01350, Flavi_NS4A, 1 hit
PF01349, Flavi_NS4B, 1 hit
PF00972, Flavi_NS5, 1 hit
PF01570, Flavi_propep, 1 hit
PF01728, FtsJ, 1 hit
PF00949, Peptidase_S7, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF003817, Gen_Poly_FLV, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00487, DEXDc, 1 hit
SM00490, HELICc, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50494, SSF50494, 1 hit
SSF52540, SSF52540, 2 hits
SSF53335, SSF53335, 1 hit
SSF56672, SSF56672, 1 hit
SSF56983, SSF56983, 1 hit
SSF81296, SSF81296, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR04240, flavi_E_stem, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51527, FLAVIVIRUS_NS2B, 1 hit
PS51528, FLAVIVIRUS_NS3PRO, 1 hit
PS51192, HELICASE_ATP_BIND_1, 1 hit
PS51194, HELICASE_CTER, 1 hit
PS50507, RDRP_SSRNA_POS, 1 hit
PS51591, RNA_CAP01_NS5_MT, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

C8XPA8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVNPKGVNVM AARVKRAAQK TKKKAVQVSR GLRGFVLFVL TQLFMGRKLT 
        60         70         80         90        100
PNVRRLWKSS DKNSLIHVLT KIKKIVGNLL MGVSRRKKRR SATTSGTVFM 
       110        120        130        140        150
AMLGLTLAAS VARHAHHTLI NITKDDAHKL LTLRNGNCTV VATDIGNWCP 
       160        170        180        190        200
DNVEYDCVTL QDNEDPDDVD CWCYRVNNVR VTYGRCKDGN TPRRSKRAVV 
       210        220        230        240        250
ITAHLDQGLT TKKETWLGSS HFETQVQKVE KWIIRNPTYA IAAILMSWYI 
       260        270        280        290        300
GNSLKQRVVL LLLTLALGPA YATHCVGIPK RDFVQGVQGT TWVNLVLEQG 
       310        320        330        340        350
GCVTIMAEGK PSVDVWMDNI KFTSPTLVRR ISHTATISDT KIATACPSNG 
       360        370        380        390        400
EAKLDEEHIK EYACKRLYSD RGWGNGCGLF GKGSLVACAK YESTGHMDVY 
       410        420        430        440        450
EMDMTKVEYT VKTQVHSGAK SGDLSGVKTV SFAPTSGSQP VEFSGYGNMG 
       460        470        480        490        500
LQCMIQSNVD FSTHYLVVMG NDAWLVHKAW VEDITLPWKH GEGGTWKDKQ 
       510        520        530        540        550
YMVEFGEPHA TTVKVLALGP QEGALRNALA GAMIVTYESS GKTFKLHGGH 
       560        570        580        590        600
VTCKATVSGL ALKGTTYTNC RGGLSFVKTP TDTGHGTVVM QVKVAKSAPC 
       610        620        630        640        650
RLTAIAADDA SGHVNRGTLV TSNPIAASNN DEVMIEINPP YGTSYLIVGV 
       660        670        680        690        700
GDDKLVYQWK KSGSTIGSLF SETVKGAQRM AIVGSSSWDF SSTSGFFSSV 
       710        720        730        740        750
GKAIHTVFGT AFHGIFGGLS WMTRILIGVL LVWLGLNSRN GTATTLMMLT 
       760        770        780        790        800
GFIILFLSLG VGAEVGCSVN WGQKELKCGD GIFVYNDVDD WMHKYKYHPE 
       810        820        830        840        850
DPKVMAGLIA KAWEKGACGL TSVSELEHVM WVKIASEINA ILEENEIDLT 
       860        870        880        890        900
VVVHENKSVY RRGSRRFPRV ETELTYGWES WGKNFITDGK VSNNTFHVDG 
       910        920        930        940        950
KEDQCASKNR VWNSLEIEEF GFGVFHTNVF LRQKADKTNS CDTTLMGAAV 
       960        970        980        990       1000
KGNVAAHADP GFWMESQENN GTWEIQSIEF TAYRECEWPV SHTVHGTQVM 
      1010       1020       1030       1040       1050
ESDMFMPKGI GGPVSHLNRM QGYKVQTNGA WAYGKTVVQR ELCPDTSVVV 
      1060       1070       1080       1090       1100
DSSCSDRGKS IRSTTTEGKV IKEWCCRSCT LPPVSYWTSE GCWYAMEVRP 
      1110       1120       1130       1140       1150
MKTPEKHLVR SWVTAGDSYP AWSIGLVAMF LFVDIMARSR PTRKMMIGGT 
      1160       1170       1180       1190       1200
MLLLAIMIMG ELSYLDLLRY IIVVGEHFIE RENGGDVAYM AIMAASHLRP 
      1210       1220       1230       1240       1250
GLMAMVFAKS MWSPKQRVLL ALGCAILQPF LTAQASALVW EWADSIGLVL 
      1260       1270       1280       1290       1300
LIVQGMVRNK EKNWALVLLA LCSPVSMPVI RKASMIIGTG GLLLSLWKGG 
      1310       1320       1330       1340       1350
GSSMRKGLPL FAASAARVLG LTKAHLSVLF ILLITKNGKR TWPISECLAA 
      1360       1370       1380       1390       1400
VGIFGAAFGT MFSEDETLLG PLALVGVVLI VYTMFTQSDG LELVKAADIS 
      1410       1420       1430       1440       1450
WSDEAVVSGE ARRFDVALND SGEFKLLDEP PVSWLNVSFL VVAIVASSLH 
      1460       1470       1480       1490       1500
PIALVVTLVA WTYWRTEKRS GVLWDVPLAP KVEACEHLED GVFRIIQKGL 
      1510       1520       1530       1540       1550
FGSSQVGIGV AKDGVFHTMW HVTRGAFLMH SGKQLTPTWG SVRKDLVCYG 
      1560       1570       1580       1590       1600
GTWKLDGAWN GVDEVQLIAV PPGKPATNVQ TKPGTFVLPT GDEAGAVLLD 
      1610       1620       1630       1640       1650
FPSGTSGSPI IDRHGNILGL YGNGIVLENG AYASAISQAQ PGSVAEVETP 
      1660       1670       1680       1690       1700
GLDKMLRKGE FTMLDYHPGA GKTRKHLPNI LKECERKRLR TLVLAPTRVV 
      1710       1720       1730       1740       1750
LSEMKEALTS VQAKFHTQAF NSTTTGREII DVMCHATFVH RMLEGLRSGN 
      1760       1770       1780       1790       1800
WEVIIMDEAH FLDPTSIAAR GWAHHKSKTK ESAVIFMTAT PPGTSNEFPE 
      1810       1820       1830       1840       1850
SNAEIEDVKK EIPSEPWSKG HEWILEDRRP TVWFLPSIKA ANVMAACLRK 
      1860       1870       1880       1890       1900
AERSVVVLNR STFENVYPTI KTKKPDFILA TDIAEMGANL PVERVIDCRT 
      1910       1920       1930       1940       1950
AYKPVLVDER VALKGPLRIA AAAAAQRRGR VGRNPDRDGD TYVYSEDTCE 
      1960       1970       1980       1990       2000
QNDHLVCWTE GSMLLDNMQV KGGFVAPLYE EEASKTTMTP GECRLRDDQR 
      2010       2020       2030       2040       2050
KVFRTLIRKH DMPVWLSWQV AKSGLAADDR KWCFDGEDDN AILGDNGEVI 
      2060       2070       2080       2090       2100
KARSPGGQRK ELKPRWSDAR IASDNTSLMN FIAFAEGRRS LPLSILWSVP 
      2110       2120       2130       2140       2150
NQLSEKLVQS IDTLTILLRS EEGSRAHKLA LQQAPEAVST LLLLGMMAIC 
      2160       2170       2180       2190       2200
TLGLVILLMK PKATDKMSMA MVTMAITGYL LKLGGMTHAQ VGGILLVFFI 
      2210       2220       2230       2240       2250
MMVVIIPESG TQRSINDNKL AYVIILVGLV IGGVACNELG WLEKTKADLF 
      2260       2270       2280       2290       2300
GNNMTHAQTV VLPTINWNWL DFRPGAAWSL YVGMATFLTP VFVHWIKNEY 
      2310       2320       2330       2340       2350
GNASLTGITP TAGILGALNQ GVPFVKLNTS VGVLLLSVWN NFTTSSMLAA 
      2360       2370       2380       2390       2400
MVMLACHCLF VLPGVRAQCL REAQIRVFHG VAKNPMVDGN PTVDLEKEND 
      2410       2420       2430       2440       2450
MPDLYEKKLA LVALGMAAVL NAAMVRTALT TAEMVVLGSA AVGPLLEGNT 
      2460       2470       2480       2490       2500
SAFWNGPLAV AVAGVMRGNH YALIGIVYNL WLLKTARRGG SSALTYGEVW 
      2510       2520       2530       2540       2550
KRQLNLLGKQ EFMNYKVSDI LEVDRSHARE VLNSGNDAVG VAVSRGSSKL 
      2560       2570       2580       2590       2600
NWLIERGYLR PTGRVVDLGC GRGGWSYTCA AERQVTSVKA YTLGKEGHEK 
      2610       2620       2630       2640       2650
PRLIQSLGWN IIKFKDKSDI TRMTPHASDT LLCDIGESSS NPEVEKERTL 
      2660       2670       2680       2690       2700
RVIEAVEKWM SPTTVSFCFK VLAPYKPDVI EALERFQLKH GGGIIRNPYS 
      2710       2720       2730       2740       2750
RNSTHEMYYV SGVRNNILHM VNSTSRMLMR RMSRPSGRST VVPDLIYPTG 
      2760       2770       2780       2790       2800
TRSVASEAGP LDLEKVKARI NRLKEEQEST WFVDSDHPYR TWHYHGSYVA 
      2810       2820       2830       2840       2850
KQSGTAASMI NGVVKLLSGP WDRIEEVTNM AMTDTTPFGQ QRVFKEKVDT 
      2860       2870       2880       2890       2900
RAPEPPQGTR EIMKVVNQWL FDYLGRTKQP RICTKEEFIN KVRSHAALGG 
      2910       2920       2930       2940       2950
ILTEQEGWSS AAEAVADPRF WSLVDKERQA HLEGRCETCI YNMMGKREKK 
      2960       2970       2980       2990       3000
PSEFGRAKGS RAIWYMWLGA RFLEFEALGF LNEDHWLGRE NSKAGVEGIG 
      3010       3020       3030       3040       3050
LQYLGYVVEE VARKGNGLVY ADDTAGWDTR ITEADLEDEQ YIMKRMSAEH 
      3060       3070       3080       3090       3100
RQLAWAVMEL TYRNKVVKVP RPGPGGKILM DVISRRDQRG SGQVVTYPLN 
      3110       3120       3130       3140       3150
TATNMKVQLI RMAEAENVIT RNDVEKVSLI TLKELQLWLE VNGVNRLERM 
      3160       3170       3180       3190       3200
AVSGDDCIVA PVDESFAGAL HHLNAMSKTR KDISEWENSR GWTDWESVPF 
      3210       3220       3230       3240       3250
CSHHFHTLYL KDGRTIIAPC RCQDELIGRA RISPGNGWMI KETAGLSKAY 
      3260       3270       3280       3290       3300
TQMWTLMYFH RRDLRLMANA ICSAVPIDWV PTGRTTWSIH ATGEWMSSDD 
      3310       3320       3330       3340       3350
MLEVWNKVWI QDNPHVKDKT PIFAWRDVPY IQKGQDRACG SLVGTSLRAS 
      3360       3370       3380       3390 
WAESIMTSVH RVRMLIGNER YVNYMESMDR YATQRCSAYG ELL
Length:3,393
Mass (Da):375,607
Last modified:November 3, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8904BB7A51011FC4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
DQ859056 Genomic RNA Translation: ABI54472.1

NCBI Reference Sequences

More...RefSeqi		YP_009222007.1, NC_029054.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		40524942

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		vg:40524942

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ859056 Genomic RNA Translation: ABI54472.1
RefSeqiYP_009222007.1, NC_029054.1

3D structure databases

SMRiC8XPA8
ModBaseiSearch...

Protein family/group databases

MEROPSiS07.001

Genome annotation databases

GeneIDi40524942
KEGGivg:40524942

Family and domain databases

CDDicd12149, Flavi_E_C, 1 hit
Gene3Di1.10.8.970, 1 hit
1.20.1280.260, 1 hit
2.40.10.10, 1 hit
2.60.260.50, 1 hit
2.60.40.350, 1 hit
2.60.98.10, 1 hit
3.30.387.10, 1 hit
3.30.67.10, 1 hit
InterProiView protein in InterPro
IPR011492, DEAD_Flavivir
IPR043502, DNA/RNA_pol_sf
IPR000069, Env_glycoprot_M_flavivir
IPR038302, Env_glycoprot_M_sf_flavivir
IPR013755, Flav_gly_cen_dom_subdom1
IPR001122, Flavi_capsidC
IPR027287, Flavi_E_Ig-like
IPR026470, Flavi_E_Stem/Anchor_dom
IPR038345, Flavi_E_Stem/Anchor_dom_sf
IPR001157, Flavi_NS1
IPR000752, Flavi_NS2A
IPR000487, Flavi_NS2B
IPR000404, Flavi_NS4A
IPR001528, Flavi_NS4B
IPR002535, Flavi_propep
IPR038688, Flavi_propep_sf
IPR000336, Flavivir/Alphavir_Ig-like_sf
IPR001850, Flavivirus_NS3_S7
IPR014412, Gen_Poly_FLV
IPR011998, Glycoprot_cen/dimer
IPR036253, Glycoprot_cen/dimer_sf
IPR038055, Glycoprot_E_dimer_dom
IPR013756, GlyE_cen_dom_subdom2
IPR014001, Helicase_ATP-bd
IPR001650, Helicase_C
IPR014756, Ig_E-set
IPR026490, mRNA_cap_0/1_MeTrfase
IPR027417, P-loop_NTPase
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR000208, RNA-dir_pol_flavivirus
IPR007094, RNA-dir_pol_PSvirus
IPR002877, rRNA_MeTrfase_FtsJ_dom
IPR029063, SAM-dependent_MTases
PfamiView protein in Pfam
PF01003, Flavi_capsid, 1 hit
PF07652, Flavi_DEAD, 1 hit
PF02832, Flavi_glycop_C, 1 hit
PF00869, Flavi_glycoprot, 1 hit
PF01004, Flavi_M, 1 hit
PF00948, Flavi_NS1, 1 hit
PF01005, Flavi_NS2A, 1 hit
PF01002, Flavi_NS2B, 1 hit
PF01350, Flavi_NS4A, 1 hit
PF01349, Flavi_NS4B, 1 hit
PF00972, Flavi_NS5, 1 hit
PF01570, Flavi_propep, 1 hit
PF01728, FtsJ, 1 hit
PF00949, Peptidase_S7, 1 hit
PIRSFiPIRSF003817, Gen_Poly_FLV, 1 hit
SMARTiView protein in SMART
SM00487, DEXDc, 1 hit
SM00490, HELICc, 1 hit
SUPFAMiSSF50494, SSF50494, 1 hit
SSF52540, SSF52540, 2 hits
SSF53335, SSF53335, 1 hit
SSF56672, SSF56672, 1 hit
SSF56983, SSF56983, 1 hit
SSF81296, SSF81296, 1 hit
TIGRFAMsiTIGR04240, flavi_E_stem, 1 hit
PROSITEiView protein in PROSITE
PS51527, FLAVIVIRUS_NS2B, 1 hit
PS51528, FLAVIVIRUS_NS3PRO, 1 hit
PS51192, HELICASE_ATP_BIND_1, 1 hit
PS51194, HELICASE_CTER, 1 hit
PS50507, RDRP_SSRNA_POS, 1 hit
PS51591, RNA_CAP01_NS5_MT, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPOLG_BANV
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C8XPA8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 27, 2017
Last sequence update: November 3, 2009
Last modified: August 12, 2020
This is version 84 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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