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Protein

50S ribosomal protein L5

Gene

rplE

Organism
Desulfohalobium retbaense (strain ATCC 49708 / DSM 5692 / JCM 16813 / HR100)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImported, RNA-binding, rRNA-bindingUniRule annotation, tRNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciDRET485915:G1GG0-2065-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L5UniRule annotation
Gene namesi
Name:rplEUniRule annotation
Ordered Locus Names:Dret_2053Imported
OrganismiDesulfohalobium retbaense (strain ATCC 49708 / DSM 5692 / JCM 16813 / HR100)Imported
Taxonomic identifieri485915 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfohalobiaceaeDesulfohalobium
Proteomesi
  • UP000001052 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi485915.Dret_2053

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini25 – 80Ribosomal_L5InterPro annotationAdd BLAST56
Domaini84 – 177Ribosomal_L5_CInterPro annotationAdd BLAST94

Sequence similaritiesi

Belongs to the universal ribosomal protein uL5 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CW6 Bacteria
COG0094 LUCA
HOGENOMiHOG000231311
KOiK02931
OMAiEQVMFHE
OrthoDBiPOG091H007J

Family and domain databases

Gene3Di3.30.1440.10, 1 hit
HAMAPiMF_01333_B Ribosomal_L5_B, 1 hit
InterProiView protein in InterPro
IPR002132 Ribosomal_L5
IPR020930 Ribosomal_L5_bac-type
IPR031309 Ribosomal_L5_C
IPR020929 Ribosomal_L5_CS
IPR022803 Ribosomal_L5_dom_sf
IPR031310 Ribosomal_L5_N
PANTHERiPTHR11994 PTHR11994, 1 hit
PfamiView protein in Pfam
PF00281 Ribosomal_L5, 1 hit
PF00673 Ribosomal_L5_C, 1 hit
PIRSFiPIRSF002161 Ribosomal_L5, 1 hit
SUPFAMiSSF55282 SSF55282, 1 hit
PROSITEiView protein in PROSITE
PS00358 RIBOSOMAL_L5, 1 hit

Sequencei

Sequence statusi: Complete.

C8X463-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTRLETLYKD NIVPELSKEF GYSSQMQVPS MKCVVLNMGL GAGSQDNKII
60 70 80 90 100
QDAVQELALI AGQKPVVTRA KKSIAAFKLR EGMPVGCRVT LRKRRMWDFV
110 120 130 140 150
DKLINFALPR VRDFRGIADR GFDGRGNFTL GIRDHTIFPE INMDKVDRIK
160 170
GLNVTMVTSA QTDKEGKMLL DQLGMPFRK
Length:179
Mass (Da):20,209
Last modified:November 3, 2009 - v1
Checksum:i9FB5371DDDF3178A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001734 Genomic DNA Translation: ACV69337.1
RefSeqiWP_015752479.1, NC_013223.1

Genome annotation databases

EnsemblBacteriaiACV69337; ACV69337; Dret_2053
KEGGidrt:Dret_2053

Similar proteinsi

Entry informationi

Entry nameiC8X463_DESRD
AccessioniPrimary (citable) accession number: C8X463
Entry historyiIntegrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: March 28, 2018
This is version 55 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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