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Entry version 47 (08 May 2019)
Sequence version 1 (03 Nov 2009)
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Protein
Submitted name:

Glycosyl transferase family 8

Gene

Apar_1112

Organism
Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionTransferaseImported

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
APAR521095:G1GFW-1140-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

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CAZyi
GT2 Glycosyltransferase Family 2
GT8 Glycosyltransferase Family 8

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Glycosyl transferase family 8Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Apar_1112Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAtopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri521095 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaActinobacteriaCoriobacteriiaCoriobacterialesAtopobiaceaeAtopobium
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000960 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

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STRINGi
521095.Apar_1112

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini5 – 159Glyco_trans_2-likeInterPro annotationAdd BLAST155
Domaini389 – 629DUF4422InterPro annotationAdd BLAST241

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4108N80 Bacteria
ENOG410XQI4 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000079949

Identification of Orthologs from Complete Genome Data

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OMAi
TNNAHIS

Database of Orthologous Groups

More...
OrthoDBi
37059at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
3.90.550.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR025536 DUF4422
IPR001173 Glyco_trans_2-like
IPR002495 Glyco_trans_8
IPR029044 Nucleotide-diphossugar_trans

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14393 DUF4422, 1 hit
PF01501 Glyco_transf_8, 1 hit
PF00535 Glycos_transf_2, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53448 SSF53448, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C8W7U9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPKVSFVIPA YNIESYIGRC IQSVKNQTFG DFEAIIVDDA STDSTPEKIV
60 70 80 90 100
TAVGDDKRFK VVTHATNQGL HLARKTAAAY TKGEWVFCLD GDDEVTPDFL
110 120 130 140 150
EQVVGRIEQN PVDILHLGIT VIPENGVSEA EAEGFGSFIN QQSHFTQGDE
160 170 180 190 200
VLRTIFDESY GQKIDWRTTQ RLYRGELFRS AFAEMTSERL VRAEDAYEVF
210 220 230 240 250
VLSDKAQTAD GFESCRGLLY HFGIGVTGVS RISLDKFGEF CYQFLDNIEQ
260 270 280 290 300
TEFYIGKTDN VVYLRSFEGM KHKLMELLIG DWKSRLAPED QEAALEPFAI
310 320 330 340 350
LFGPSVAARE LYRFVRDDAY EAIKTCTELP EDSNAYLYRS YAKKYAALMH
360 370 380 390 400
QDEGLSFDRA VRMKQIADEH MEYLERKHMV KMFEQQPIRI FITSHKDVDV
410 420 430 440 450
PESNYLQPIQ VGPGQKTNRF SYMLHDDEGD NITEKNPMYC EMTTQYWAWK
460 470 480 490 500
NITNERYVGF GHYRRYFNFT DTIYPENPFG EVMDDFIDED AIKKYGLDDQ
510 520 530 540 550
TIAQCIEGYD LITTGVKDIR KFPGSANTPL EQYHAAPLLH PKDMDTMAAL
560 570 580 590 600
IVERHPEYAE DVNAFLNGYE QCFCNMYIMR RELFDRYAAW VFPLVDEWTA
610 620 630 640 650
RTDMSTYSKE ALRTPGHLTE RLFNIWRMHM LRTEGKNWKV KELQCVHFTN
660 670 680 690 700
PEPRQKFIPL FEEKPEIASQ NVVPVVFAAD NNYVPILTCA MGSMLENADP
710 720 730 740 750
NRYYDVVVLN TNIGGSKQEL VKKFFSRYKN ARITFYNVWR MVKDYKLDTN
760 770 780 790 800
NAHISVETYF RFLAQDILSA YDKVVYLDSD LVVNGNVAEL YDVRIGNNLI
810 820 830 840 850
AATLDIDYLA NLNIRGGDRM KYSLDVLNLK NPYAYFQAGV MVFNTAELRR
860 870 880 890 900
YHTVPEWLRI ASNPIFIYND QDILNSECQG RVLYLPADWN VTHNIFGRAE
910 920 930 940 950
ELYPMAPNSV FDDYQAARRA PKIVHFAGAI KPWQNASCDM ASYFWKYARN
960 970 980 990 1000
TPFYEVIIQD MVPSARNDAD VTEFHERALS DASPLRKIID PIAPYGSARR
1010
EALKALGRTL RGRK
Length:1,014
Mass (Da):116,972
Last modified:November 3, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i14DB3229ABCF74C7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP001721 Genomic DNA Translation: ACV51540.1

NCBI Reference Sequences

More...
RefSeqi
WP_012809197.1, NC_013203.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ACV51540; ACV51540; Apar_1112

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
apv:Apar_1112

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001721 Genomic DNA Translation: ACV51540.1
RefSeqiWP_012809197.1, NC_013203.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi521095.Apar_1112

Protein family/group databases

CAZyiGT2 Glycosyltransferase Family 2
GT8 Glycosyltransferase Family 8

Genome annotation databases

EnsemblBacteriaiACV51540; ACV51540; Apar_1112
KEGGiapv:Apar_1112

Phylogenomic databases

eggNOGiENOG4108N80 Bacteria
ENOG410XQI4 LUCA
HOGENOMiHOG000079949
OMAiTNNAHIS
OrthoDBi37059at2

Enzyme and pathway databases

BioCyciAPAR521095:G1GFW-1140-MONOMER

Family and domain databases

Gene3Di3.90.550.10, 2 hits
InterProiView protein in InterPro
IPR025536 DUF4422
IPR001173 Glyco_trans_2-like
IPR002495 Glyco_trans_8
IPR029044 Nucleotide-diphossugar_trans
PfamiView protein in Pfam
PF14393 DUF4422, 1 hit
PF01501 Glyco_transf_8, 1 hit
PF00535 Glycos_transf_2, 1 hit
SUPFAMiSSF53448 SSF53448, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC8W7U9_ATOPD
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C8W7U9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: May 8, 2019
This is version 47 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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