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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Cpin_2176

Organism
Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi99Calcium 1UniRule annotation1
Metal bindingi192Calcium 1UniRule annotation1
Metal bindingi198Calcium 1UniRule annotation1
Active sitei229NucleophileUniRule annotation1
Metal bindingi233Calcium 1; via carbonyl oxygenUniRule annotation1
Active sitei259Proton donorUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumUniRule annotation, Metal-bindingUniRule annotation

Protein family/group databases

CAZyiGH13 Glycoside Hydrolase Family 13

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Cpin_2176Imported
OrganismiChitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)Imported
Taxonomic identifieri485918 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesChitinophagiaChitinophagalesChitinophagaceaeChitinophaga
Proteomesi
  • UP000002215 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi485918.Cpin_2176

Structurei

3D structure databases

ProteinModelPortaliC7PDT9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 397AamyInterPro annotationAdd BLAST397

Phylogenomic databases

eggNOGiENOG4105E5K Bacteria
COG0366 LUCA
HOGENOMiHOG000094847
KOiK01176
OMAiVLNHKMG
OrthoDBiPOG091H0HQ3

Family and domain databases

Gene3Di2.60.40.1180, 1 hit
InterProiView protein in InterPro
IPR013776 A-amylase_thermo
IPR015237 Alpha-amylase_C_pro
IPR006047 Glyco_hydro_13_cat_dom
IPR013780 Glyco_hydro_b
IPR017853 Glycoside_hydrolase_SF
PfamiView protein in Pfam
PF00128 Alpha-amylase, 1 hit
PF09154 DUF1939, 1 hit
PIRSFiPIRSF001021 Alph-amls_thrmst, 1 hit
SMARTiView protein in SMART
SM00642 Aamy, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit

Sequencei

Sequence statusi: Complete.

C7PDT9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMQYFHWYTP EDGSLWNTVK KEAPKLAALG INAIWLPPAY KGADGASSRG
60 70 80 90 100
YDVYDLYDLG EFDQKGTVRT RYGTREEFEA AVKAIQESGM QVYVDVVANH
110 120 130 140 150
LMGGDETEKV TVRKVDAENR NEFISEPMEV EAYTRFTYPG RKGAHSDFVW
160 170 180 190 200
DHQCFTGIDH VSNSDEEGIF TIQNEYGEGW EEVIDTEKGN YDYLMGADIE
210 220 230 240 250
FRNPAVREEF RRWGEWYYNA VKFDGFRLDA VKHITPSFFN EWLDQMRQYT
260 270 280 290 300
GRELFAVGEY WAPGQLDLLL KYIEATEGKM SLFDASLHHN FYDASLKGKD
310 320 330 340 350
YDLTTIFDGS LVQAKPFLAV TVIGNHDTQP LQALEAPVDY WFKPIAYALI
360 370 380 390 400
LLREHGYPCV FYPDLYGAKY TDKNGEGEDT EIELVPVEGL ELLIPARDQH
410 420 430 440 450
AYGVQRDYFD HANCIGWTRE GDEEHTGCAV VISNGEEGNK HMEIGKRYAG
460 470 480
KRFKDILGKR QEEIVVDEEG WAEFLCAAGS VSVWTLAE
Length:488
Mass (Da):55,782
Last modified:October 13, 2009 - v1
Checksum:i3EBB23D61F270AF1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001699 Genomic DNA Translation: ACU59668.1

Genome annotation databases

EnsemblBacteriaiACU59668; ACU59668; Cpin_2176
KEGGicpi:Cpin_2176

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001699 Genomic DNA Translation: ACU59668.1

3D structure databases

ProteinModelPortaliC7PDT9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi485918.Cpin_2176

Protein family/group databases

CAZyiGH13 Glycoside Hydrolase Family 13

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU59668; ACU59668; Cpin_2176
KEGGicpi:Cpin_2176

Phylogenomic databases

eggNOGiENOG4105E5K Bacteria
COG0366 LUCA
HOGENOMiHOG000094847
KOiK01176
OMAiVLNHKMG
OrthoDBiPOG091H0HQ3

Family and domain databases

Gene3Di2.60.40.1180, 1 hit
InterProiView protein in InterPro
IPR013776 A-amylase_thermo
IPR015237 Alpha-amylase_C_pro
IPR006047 Glyco_hydro_13_cat_dom
IPR013780 Glyco_hydro_b
IPR017853 Glycoside_hydrolase_SF
PfamiView protein in Pfam
PF00128 Alpha-amylase, 1 hit
PF09154 DUF1939, 1 hit
PIRSFiPIRSF001021 Alph-amls_thrmst, 1 hit
SMARTiView protein in SMART
SM00642 Aamy, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiC7PDT9_CHIPD
AccessioniPrimary (citable) accession number: C7PDT9
Entry historyiIntegrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: November 7, 2018
This is version 50 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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