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Entry version 56 (05 Jun 2019)
Sequence version 1 (13 Oct 2009)
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Protein
Submitted name:

Glycoside hydrolase family 9

Gene

Huta_2399

Organism
Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolaseImported

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
HUTA519442:GH3V-2439-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

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CAZyi
CBM3 Carbohydrate-Binding Module Family 3
GH9 Glycoside Hydrolase Family 9

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Glycoside hydrolase family 9Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Huta_2399Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHalorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri519442 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiArchaeaEuryarchaeotaStenosarchaea groupHalobacteriaHalobacterialesHaloarculaceaeHalorhabdus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002071 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

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STRINGi
519442.Huta_2399

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini562 – 723CBM3InterPro annotationAdd BLAST162
Domaini737 – 825Fibronectin type-IIIInterPro annotationAdd BLAST89

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni720 – 741DisorderedSequence analysisAdd BLAST22
Regioni822 – 842DisorderedSequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi726 – 741PolarSequence analysisAdd BLAST16
Compositional biasi822 – 841AcidicSequence analysisAdd BLAST20

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
arCOG10648 Archaea
ENOG4110BWW LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000021032

KEGG Orthology (KO)

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KOi
K01179

Database of Orthologous Groups

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OrthoDBi
132207at2157

Family and domain databases

Conserved Domains Database

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CDDi
cd00063 FN3, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.50.10.10, 1 hit
2.60.40.10, 1 hit
2.60.40.710, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008928 6-hairpin_glycosidase_sf
IPR012341 6hp_glycosidase-like_sf
IPR008965 CBM2/CBM3_carb-bd_dom_sf
IPR001956 CBM3
IPR036966 CBM3_sf
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR001701 Glyco_hydro_9
IPR013783 Ig-like_fold
IPR006311 TAT_signal

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00942 CBM_3, 1 hit
PF00041 fn3, 1 hit
PF00759 Glyco_hydro_9, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01067 CBM_3, 1 hit
SM00060 FN3, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48208 SSF48208, 1 hit
SSF49265 SSF49265, 1 hit
SSF49384 SSF49384, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51172 CBM3, 1 hit
PS50853 FN3, 1 hit
PS51318 TAT, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C7NMC6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTEHDAKSGG MGRTTTDGDT DLFRRDLLAA MGLGAGSVAL GTDVATPSVV
60 70 80 90 100
SRAAAQTDLG FDYAHALQQS LYFYDANRCG ATTMGNRLQW RGECHHSDTE
110 120 130 140 150
IPLDAATEDG GTNLSGSFIE EYSDVLDPDG TGTIDVSGGF HDAGDHMKFG
160 170 180 190 200
LPQSYSASTL SWALYEFEDA FRDVGSYDHM VDILRHFADY FLKSTFRDDE
210 220 230 240 250
GNVVAFCYHV GEGSIDHNYW GPPELQSSEE YPRPAYFATP EDPASDQCAG
260 270 280 290 300
TAAALTITSL VLESEDSAYA AECLDTAQAL YDFAVENRGL GYDGGFYDSS
310 320 330 340 350
YDEDELSWAA VWLHIATEDD AYLDDILATD DSGTYTGYLG EIIDSTDDDW
360 370 380 390 400
QNIWVHSWDT VWGGVFLKLA PITDDPEHWQ IARWNLEYLS GGSVEHEDDN
410 420 430 440 450
DTNYASTSDA GFTVLNTWGS ARYNAAAQFQ AMVYRKYRDT EKAVALTDWA
460 470 480 490 500
ATQMNYIMGD NSFGYSLIVG FTDDHAEHPH HRAAHGSKEN SMEEPEEHRH
510 520 530 540 550
TLWGALVGGP DEDDTHVDET SDYVYNEVAI DFNAGLVGAL AGFNTFYDDT
560 570 580 590 600
GEAVAEFPPG EEPIDAYYAE GEVLQENADR TQVRVTIHNE SIHPPHREDG
610 620 630 640 650
LSARYFIDVS ELRDAGQSID AVSVEVQYDQ QSTMGDGSAD VSGPIAWDED
660 670 680 690 700
AGIYYIELDW SGNQIYGARE IQISMIAEQD DNWESNWDPS NDPSFQDIGE
710 720 730 740 750
AATVTEAISV YLDGELVYGQ LPGESESEPD DTTAPTAPSN LSVVETTASS
760 770 780 790 800
AEVEWEAASD EGGSGLDHYT ISVAGDFDQQ VGAGTTTATV EELDAETTYE
810 820 830 840 850
IGVSAVDGAG NESDTVTVEA TTDEADDGED DSDDEESPTD ALVVNDYDGD
860 870 880 890 900
PAWSSNRNDL GQWCGAGSFE NGAGEVADGA LVLEYDNGGW YQEQINRDVS
910 920 930 940 950
DYSSVVLDVC GANGGEENEI RFAMGGVSGL LGDLTGDSIG TSAGEVRIDM
960 970 980
ESAGIDPTAE GLAVRLNFWQ GGESTLAIEA IRLE
Length:984
Mass (Da):106,567
Last modified:October 13, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i209194123A76616B
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
CP001687 Genomic DNA Translation: ACV12565.1

NCBI Reference Sequences

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RefSeqi
WP_015790131.1, NC_013158.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ACV12565; ACV12565; Huta_2399

Database of genes from NCBI RefSeq genomes

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GeneIDi
8384698

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
hut:Huta_2399

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001687 Genomic DNA Translation: ACV12565.1
RefSeqiWP_015790131.1, NC_013158.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi519442.Huta_2399

Protein family/group databases

CAZyiCBM3 Carbohydrate-Binding Module Family 3
GH9 Glycoside Hydrolase Family 9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACV12565; ACV12565; Huta_2399
GeneIDi8384698
KEGGihut:Huta_2399

Phylogenomic databases

eggNOGiarCOG10648 Archaea
ENOG4110BWW LUCA
HOGENOMiHOG000021032
KOiK01179
OrthoDBi132207at2157

Enzyme and pathway databases

BioCyciHUTA519442:GH3V-2439-MONOMER

Family and domain databases

CDDicd00063 FN3, 1 hit
Gene3Di1.50.10.10, 1 hit
2.60.40.10, 1 hit
2.60.40.710, 1 hit
InterProiView protein in InterPro
IPR008928 6-hairpin_glycosidase_sf
IPR012341 6hp_glycosidase-like_sf
IPR008965 CBM2/CBM3_carb-bd_dom_sf
IPR001956 CBM3
IPR036966 CBM3_sf
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR001701 Glyco_hydro_9
IPR013783 Ig-like_fold
IPR006311 TAT_signal
PfamiView protein in Pfam
PF00942 CBM_3, 1 hit
PF00041 fn3, 1 hit
PF00759 Glyco_hydro_9, 1 hit
SMARTiView protein in SMART
SM01067 CBM_3, 1 hit
SM00060 FN3, 1 hit
SUPFAMiSSF48208 SSF48208, 1 hit
SSF49265 SSF49265, 1 hit
SSF49384 SSF49384, 1 hit
PROSITEiView protein in PROSITE
PS51172 CBM3, 1 hit
PS50853 FN3, 1 hit
PS51318 TAT, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC7NMC6_HALUD
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C7NMC6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: June 5, 2019
This is version 56 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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