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UniProtKB - C7JJ99 (C7JJ99_ACEP3)

Entry version 48 (13 Nov 2019)
Sequence version 1 (13 Oct 2009)
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Protein
Submitted name:

Conjugal transfer protein TraA

Gene

traA

Organism
Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		APAS634452:APA01_RS15590-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugal transfer protein TraAImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traAImported
Ordered Locus Names:APA01_43860Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pAPA01-030Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAcetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri634452 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Acetobacteraceae › Acetobacter ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000948 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Plasmid pAPA01-030

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini17 – 217MobA_MobLInterPro annotationAdd BLAST201

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni760 – 788DisorderedSequence analysisAdd BLAST29
Regioni999 – 1028DisorderedSequence analysisAdd BLAST30

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi999 – 1019PolyampholyteSequence analysisAdd BLAST21

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000138087

Identification of Orthologs from Complete Genome Data

More...OMAi		HQYQAGD

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR005053 MobA_MobL
IPR027417 P-loop_NTPase
IPR014136 TraA_Ti

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03389 MobA_MobL, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540 SSF52540, 2 hits

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR02768 TraA_Ti, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C7JJ99-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAIYHLHAKV ISRATGRSAV AAAAYRAASR LHDVRLDRDH DFSNKSGVVH 
        60         70         80         90        100
SEILLPDGAP ERFLDRATLW NEVEAIEKRK DAQLAREVEF SIPREMTQAQ 
       110        120        130        140        150
GIALARDFVR EQFVERGMVA DLNVHWDIGE DGQAKPHAHV MLSTRSVDEN 
       160        170        180        190        200
GFGAKERSWN DKELLLTWRE RWASLANERL AELDLDVRID HRSFAAQGID 
       210        220        230        240        250
LEPQNKIGPA GMRREERGED AERVADHLEI ARRNGERLLA EPHVALEALT 
       260        270        280        290        300
RQQSTFTRQD MARFVDRQTV DAEQFTAVMV RVEACPELVA LGKDGHGRER 
       310        320        330        340        350
FSTRAMIGVE QRLEEASLAM GQSQGHAVPL AVRRAAMQHS GLGEEQALAV 
       360        370        380        390        400
GEVTKSRDLS VVVGYAGTGK STMLGVARAA WEEAGYRVRG AALSGIAAEG 
       410        420        430        440        450
LEAGSGIESR TLASLERAWE RGFDLLERGD VLVVDEAGMV GSRQMERVLS 
       460        470        480        490        500
VAREAGAKVV LVGDPEQLQA IEAGGAFRAV AERVGSVEIT TVRRQREGWQ 
       510        520        530        540        550
QAATKELATG RTEQALGRYE AAGLVRGHDT LEEARAGVVA GWEEARQAAP 
       560        570        580        590        600
EESQIMLAHR RVDVRALNEA AREIRRDAGE LGDDVLVPTA QGERVFANGE 
       610        620        630        640        650
RVYFLRNDRE LGVKNGTLGT VRSIVGSAEA GDLAMSVQLD GPGGAGTGRV 
       660        670        680        690        700
VSVSVAEYDA LDHGYAATIH KSQGVTVDRA HVLATGSMDR HGAYVALSRH 
       710        720        730        740        750
RESVSVHWGR DDVGDRDGLV RRLSCERLKD TTLDYPHVRD RDTGFARRRG 
       760        770        780        790        800
LHVPESEIVV EREKAASGPR QDRQAEGVPM PDPASAQQKR GMFDGLDLSV 
       810        820        830        840        850
RPGRCTTEKD VSAGLDAGAG KGESGIEREA PVSPFAGLRL PRVQREQVPA 
       860        870        880        890        900
GLDGFVPGSD PLHQAVERYA RAWVDAERMV RQELPVLEHQ KKALLEAGRD 
       910        920        930        940        950
LERIRRGGEA DLRAALKHQP EIRQALYGLE GPARARKLVE GLEHEDRVRK 
       960        970        980        990       1000
RPDLRAARFV KTWDGLSREQ QGVAFKELKR DAQLESILRE KSRELGIRKG 
      1010       1020 
STLDHGLHPH QREQALSRSR SRGMDMGM
Length:1,028
Mass (Da):113,178
Last modified:October 13, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7750E86DC6B22C4B
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AP011124 Genomic DNA Translation: BAI01173.1

NCBI Reference Sequences

More...RefSeqi		WP_012813389.1, NC_013212.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		BAI01173; BAI01173; APA01_43860

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		apt:APA01_43860

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|634452.3.peg.3138

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011124 Genomic DNA Translation: BAI01173.1
RefSeqiWP_012813389.1, NC_013212.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiBAI01173; BAI01173; APA01_43860
KEGGiapt:APA01_43860
PATRICifig|634452.3.peg.3138

Phylogenomic databases

HOGENOMiHOG000138087
OMAiHQYQAGD

Enzyme and pathway databases

BioCyciAPAS634452:APA01_RS15590-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR005053 MobA_MobL
IPR027417 P-loop_NTPase
IPR014136 TraA_Ti
PfamiView protein in Pfam
PF03389 MobA_MobL, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
TIGRFAMsiTIGR02768 TraA_Ti, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC7JJ99_ACEP3
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C7JJ99
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: November 13, 2019
This is version 48 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported
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