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Protein
Submitted name:

Urea carboxylase

Gene

uca

Organism
Acinetobacter radioresistens SK82
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionLigaseImported
LigandATP-bindingPROSITE-ProRule annotation, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Urea carboxylaseImported (EC:6.3.4.6Imported)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ucaImported
ORF Names:ACIRA0001_2441Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAcinetobacter radioresistens SK82Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri596318 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesMoraxellaceaeAcinetobacter
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000018419 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
C6RKJ3

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 443Biotin carboxylationInterPro annotationAdd BLAST443
Domaini120 – 317ATP-graspInterPro annotationAdd BLAST198
Domaini1120 – 1198Lipoyl-bindingInterPro annotationAdd BLAST79

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
POG091H02XZ

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.100.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011761 ATP-grasp
IPR005481 BC-like_N
IPR011764 Biotin_carboxylation_dom
IPR005482 Biotin_COase_C
IPR000089 Biotin_lipoyl
IPR005479 CbamoylP_synth_lsu-like_ATP-bd
IPR003778 CT_A_B
IPR003833 CT_C_D
IPR029000 Cyclophilin-like_dom_sf
IPR016185 PreATP-grasp_dom_sf
IPR011054 Rudment_hybrid_motif
IPR011053 Single_hybrid_motif
IPR014084 Urea_COase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02785 Biotin_carb_C, 1 hit
PF00289 Biotin_carb_N, 1 hit
PF00364 Biotin_lipoyl, 1 hit
PF02786 CPSase_L_D2, 1 hit
PF02626 CT_A_B, 1 hit
PF02682 CT_C_D, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00796 AHS1, 1 hit
SM00797 AHS2, 1 hit
SM00878 Biotin_carb_C, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50891 SSF50891, 2 hits
SSF51230 SSF51230, 1 hit
SSF51246 SSF51246, 1 hit
SSF52440 SSF52440, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00724 urea_amlyse_rel, 1 hit
TIGR02712 urea_carbox, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50975 ATP_GRASP, 1 hit
PS50979 BC, 1 hit
PS50968 BIOTINYL_LIPOYL, 1 hit
PS00866 CPSASE_1, 1 hit
PS00867 CPSASE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C6RKJ3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFNKVLIANR GAIACRVIRT LKKLGIQSVA VYSEADRDSL HVTLADEAVY
60 70 80 90 100
IGEAPANQSY LNVDKILEVA KQTGAQAIHP GYGFLSENAE FCNLCEAQGI
110 120 130 140 150
VFLGPNADQM KAFGLKHTAR ELAIQANVPL LPGSQLLADE EEALLEADRI
160 170 180 190 200
GYPVMLKSTA GGGGIGMRLV WNAEELKDAY VTVSYLAQAN FKDAGLYLEK
210 220 230 240 250
FVQNARHIEV QIFGDGNGLV LALGERDCSV QRRNQKVIEE TPAPHLNDTQ
260 270 280 290 300
RAYIQNVAIQ LMQSVNYRSA GTVEFVMDTD TQEFYFLEVN TRLQVEHGVT
310 320 330 340 350
EQVFGVDLVE WMVTLGSGDW VTPTSKLESQ GHSIQVRLYA EDPIKNFQPS
360 370 380 390 400
AGLLTHVEFD ANARNETWVE TGSNVSSFYD PMIAKIIVTA EDRSSAIQAM
410 420 430 440 450
TDTLAKTQVA GIETNLEYLQ NIIDCDVFKA GTQTTRFLNS FEWKTQKIEV
460 470 480 490 500
LQAGIQTAVQ DVKGRLGYWD VGVPPSGAID PLSLNVANQL LGNAPNTAGL
510 520 530 540 550
ECTLQGPSLK FHCDSQIVLA GGDMPSTLDG VTVPMWQTVN VRKGQVLKCG
560 570 580 590 600
KIATGCRTYI GIKSGLNVPE YLGSQATFTL GQFGGHAGRN LLIGDMLPIT
610 620 630 640 650
AFTSSDGKAL SEDQIPVFSN SWEIAVMYGP HGAPDFFTKN DIDTFFANEF
660 670 680 690 700
EIHFNSSRTG IRLIGPKPEW AREDGGEAGL HPSNIHDNAY AIGAIDFTGD
710 720 730 740 750
MPIILGPDGP SLGGFVCPAV VINSELWKLG QLKAGDKVKF VPVSYHQAKL
760 770 780 790 800
LNEKYHAQLS TNDTENVTFD ESFYPEISTL KTAILDTLKG QNGTPDVVYR
810 820 830 840 850
PASNNYMLVE YGDLVLDLNL RFRIHALMQW VKEQNIQGII DLTPGIRSLQ
860 870 880 890 900
IHFDSTKLDQ IDLLHMLQVA EEQLPDVTEM QVPSRTVYLP LAWEDSQTQL
910 920 930 940 950
ATERYMQTVR PDAPWCPDNI EFIRRINGLK DKQAVKDVVY NASYLVMGLG
960 970 980 990 1000
DVYLGAPVAT PLDPRQRLVT TKYNPARTWT PENAVGIGGA YMCVYGMEGP
1010 1020 1030 1040 1050
GGYQFVGRTS QMWSRYRKNP DFEQDMPWLL RFFDQIKFYE VSESELMHMR
1060 1070 1080 1090 1100
EDFKAGRLKL RIEEGVLNLK EYNEFLTENQ ESISAFKAVQ QANFDAERRR
1110 1120 1130 1140 1150
WHEAGLAEYV SESLDAVDDG EGVEVPEGGC AVESHMPGSI WKIECQSGDI
1160 1170 1180 1190 1200
VEEGATLAVI EAMKIEIPII APERMRVDAI TIEKGQTVKT GQVLFTLAPV

A
Length:1,201
Mass (Da):132,793
Last modified:September 22, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD01C30BAC36F4A02
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
ACVR01000013 Genomic DNA Translation: EET83647.1

NCBI Reference Sequences

More...
RefSeqi
WP_005015285.1, NZ_ACVR01000013.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
EET83647; EET83647; ACIRA0001_2441

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACVR01000013 Genomic DNA Translation: EET83647.1
RefSeqiWP_005015285.1, NZ_ACVR01000013.1

3D structure databases

ProteinModelPortaliC6RKJ3
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEET83647; EET83647; ACIRA0001_2441

Phylogenomic databases

OrthoDBiPOG091H02XZ

Family and domain databases

Gene3Di2.40.100.10, 2 hits
InterProiView protein in InterPro
IPR011761 ATP-grasp
IPR005481 BC-like_N
IPR011764 Biotin_carboxylation_dom
IPR005482 Biotin_COase_C
IPR000089 Biotin_lipoyl
IPR005479 CbamoylP_synth_lsu-like_ATP-bd
IPR003778 CT_A_B
IPR003833 CT_C_D
IPR029000 Cyclophilin-like_dom_sf
IPR016185 PreATP-grasp_dom_sf
IPR011054 Rudment_hybrid_motif
IPR011053 Single_hybrid_motif
IPR014084 Urea_COase
PfamiView protein in Pfam
PF02785 Biotin_carb_C, 1 hit
PF00289 Biotin_carb_N, 1 hit
PF00364 Biotin_lipoyl, 1 hit
PF02786 CPSase_L_D2, 1 hit
PF02626 CT_A_B, 1 hit
PF02682 CT_C_D, 1 hit
SMARTiView protein in SMART
SM00796 AHS1, 1 hit
SM00797 AHS2, 1 hit
SM00878 Biotin_carb_C, 1 hit
SUPFAMiSSF50891 SSF50891, 2 hits
SSF51230 SSF51230, 1 hit
SSF51246 SSF51246, 1 hit
SSF52440 SSF52440, 1 hit
TIGRFAMsiTIGR00724 urea_amlyse_rel, 1 hit
TIGR02712 urea_carbox, 1 hit
PROSITEiView protein in PROSITE
PS50975 ATP_GRASP, 1 hit
PS50979 BC, 1 hit
PS50968 BIOTINYL_LIPOYL, 1 hit
PS00866 CPSASE_1, 1 hit
PS00867 CPSASE_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC6RKJ3_ACIRA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C6RKJ3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 22, 2009
Last sequence update: September 22, 2009
Last modified: April 25, 2018
This is version 46 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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