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Entry version 47 (07 Oct 2020)
Sequence version 1 (01 Sep 2009)
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Protein
Submitted name:

YD repeat protein

Gene

Dd1591_0420

Organism
Dickeya chrysanthemi (strain Ech1591) (Dickeya zeae (strain Ech1591))
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
YD repeat proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Dd1591_0420Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDickeya chrysanthemi (strain Ech1591) (Dickeya zeae (strain Ech1591))Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri561229 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaeDickeya
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002735 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei48 – 81HelicalSequence analysisAdd BLAST34
Transmembranei88 – 111HelicalSequence analysisAdd BLAST24

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
561229.Dd1591_0420

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni16 – 41DisorderedSequence analysisAdd BLAST26

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG3209, Bacteria
COG4104, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001218_1_8_6

Identification of Orthologs from Complete Genome Data

More...
OMAi
EGRTWRY

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008727, PAAR_motif
IPR022385, Rhs_assc_core
IPR031325, RHS_repeat
IPR006530, YD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05488, PAAR_motif, 1 hit
PF05593, RHS_repeat, 6 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03696, Rhs_assc_core, 1 hit
TIGR01643, YD_repeat_2x, 10 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C6CI62-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLNDILSRVA RVGAMHAGNR PNPPADRPQP CQGKPPTSPG KTIKHKSFLG
60 70 80 90 100
ALAGAVAGAL VAAAVFTAAA AVAGAIAVAA IGTGGMGAAL VVGVVKLAAG
110 120 130 140 150
FGAVSLLGGL IDAVSSKVSA MVDSGSPSFG PVMAGSGNVF VEKQPVARAT
160 170 180 190 200
KDTVACTRHN SPQLIAQGSE SVFVNDAPAA RIDDKTVCGA TIKEGASTVF
210 220 230 240 250
FGSGQGTYLE IAEEFTALQR ALLIAVEFLV PPSRGMFRGL GKLFTRGPMA
260 270 280 290 300
VLKGMRAGAL KTLEGLKSAV KCASEGFRNS RGLSRVTEAV RGFLKDPVYI
310 320 330 340 350
ASGEVIESRT DIALGQTLPL VFERTYRSAS VHTGLLGRGW HDSWSEVATV
360 370 380 390 400
TRDGLNTHVV ITLAQGYDID FTFHQDVQAV YCPHYPEFTL HRRGDGFSLW
410 420 430 440 450
HRDQQTWRDF SVVQGERRLL SAIHDSHDNR IELVRDPKGY LRQVRHSDGV
460 470 480 490 500
TLLLVWRGEY LHQIQRIDGG QKTLLAEYRQ DEQGRLVEAN ATHAYHLYYE
510 520 530 540 550
YDAAHRLTRW HDNDQTWARY EYDTQGRCVY TTCADGFLTA RFDYLPDRVV
560 570 580 590 600
MTDGLGQRSE FGFNDLHLMS WEQSPLGHVT RYEYDEVGNL LREISPAGRV
610 620 630 640 650
VEFGYLDDTG RVSTFTDASG HQWRYDYDDA LRLCGVTDPL GREWRWVYDA
660 670 680 690 700
EGNPERLTGP EASEVRFAWN RYGLLTQVSD AAGEVQARLQ YDHRQRLLSA
710 720 730 740 750
TDAESRTQQM RYDMQDRVVQ WQRADGARFR LGYRRASWAL PEQLIRPDDK
760 770 780 790 800
EEQRQYDRHN NLLSYVDGNG ALWRQSFGPF DLLTARTDAE GHTWRYAYDK
810 820 830 840 850
ESQQLTTVIA PDGSRWQWWL DADGRVVRER DMTGTETHYG YDEDGLCVSV
860 870 880 890 900
RNGEGDTRHF LYDARGLLLR ETAPDDTLHY RYDAVGRLTE VSSATAHVQL
910 920 930 940 950
DYDLRDRVVR EWHNGTLLTR QVDDNARTVT RTLTWDGDAG DTTGTLAPLT
960 970 980 990 1000
SLFHYTRTGE LRQVQLPDGA DLTLTYDAAG RESHRRGGSG FVQQREYDVM
1010 1020 1030 1040 1050
GWLTREMSGA QHDGHLLAAQ TREYRYDGAG NLTGVRHNRD AEGYRLDATG
1060 1070 1080 1090 1100
RVQAVLSGGA GKPVDTTARF HYTRTGLPQE AGRLTEWQAG RLVQHDDTHY
1110 1120 1130 1140 1150
QYDRAGRLIR KQVVQPGYRP QVWQYRWDSR NQLRVVDTPT GERWLYRYDP
1160 1170 1180 1190 1200
FGRRVGKRCD QKAEETRYQW DGDQIAEIRH YRHGQLVARR HWVYNGWELV
1210 1220 1230 1240 1250
VQQRQHTGGD WETDFVTSSQ NGTPQALFTP DGTLRWQAPT ATLWGQRQAE
1260 1270 1280 1290 1300
KSESPDPGLA FAGQLRDSES GLCYNRFRYY DPAGGCYVSP DPIGIAGGEN
1310 1320 1330 1340 1350
NYGYVQNPMC WVDPFGLAGC SSYLNAWGGR NAKAFKNFWN NSSHADFMKA
1360 1370 1380 1390 1400
WNNPAFKKNI KARLRGGGLT NSGGYHEWLP VSQGDKFKKM GFSFEEYMSL
1410 1420 1430 1440 1450
TSPTNKVGFL DKFGNYGSHT SYTGGVTKAS AQAHRDLINM AKLAQTKSGY
1460 1470
LGAVQKWSGE HLPFGQFDLP SGFWK
Length:1,475
Mass (Da):165,193
Last modified:September 1, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0C724C4F1C1298B1
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP001655 Genomic DNA Translation: ACT05308.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ACT05308; ACT05308; Dd1591_0420

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
dze:Dd1591_0420

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001655 Genomic DNA Translation: ACT05308.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi561229.Dd1591_0420

Genome annotation databases

EnsemblBacteriaiACT05308; ACT05308; Dd1591_0420
KEGGidze:Dd1591_0420

Phylogenomic databases

eggNOGiCOG3209, Bacteria
COG4104, Bacteria
HOGENOMiCLU_001218_1_8_6
OMAiEGRTWRY

Family and domain databases

InterProiView protein in InterPro
IPR008727, PAAR_motif
IPR022385, Rhs_assc_core
IPR031325, RHS_repeat
IPR006530, YD
PfamiView protein in Pfam
PF05488, PAAR_motif, 1 hit
PF05593, RHS_repeat, 6 hits
TIGRFAMsiTIGR03696, Rhs_assc_core, 1 hit
TIGR01643, YD_repeat_2x, 10 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC6CI62_DICC1
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C6CI62
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: October 7, 2020
This is version 47 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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