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Protein
Submitted name:

Uncharacterized protein

Gene

SORBI_3002G083600

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi204 – 260AP2/ERFPROSITE-ProRule annotationAdd BLAST57
DNA bindingi296 – 353AP2/ERFPROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:SORBI_3002G083600Imported
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)Imported
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeSorghinaeSorghum
Proteomesi
  • UP000000768 Componenti: Chromosome 2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini204 – 260AP2/ERFInterPro annotationAdd BLAST57
Domaini296 – 353AP2/ERFInterPro annotationAdd BLAST58

Phylogenomic databases

eggNOGiENOG410JA1N Eukaryota
ENOG4111667 LUCA
HOGENOMiHOG000293136
InParanoidiC5XDI6
KOiK09284
OrthoDBiEOG09360CM4

Family and domain databases

CDDicd00018 AP2, 2 hits
Gene3Di3.30.730.10, 2 hits
InterProiView protein in InterPro
IPR001471 AP2/ERF_dom
IPR036955 AP2/ERF_dom_sf
IPR016177 DNA-bd_dom_sf
PfamiView protein in Pfam
PF00847 AP2, 2 hits
PRINTSiPR00367 ETHRSPELEMNT
SMARTiView protein in SMART
SM00380 AP2, 2 hits
SUPFAMiSSF54171 SSF54171, 2 hits
PROSITEiView protein in PROSITE
PS51032 AP2_ERF, 2 hits

Sequencei

Sequence statusi: Complete.

C5XDI6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASPAIPFAP LTSHRAVPFV LGCPPPWPPR PPPAAPGRPP RPDAAAAARL
60 70 80 90 100
LEEEARAGSS RARSPAGRPE LESMVLDLNA ESPTAGSASA TSSSSGVFRF
110 120 130 140 150
DLLGGTPDEE GCSPSPPVVT RQLFPLPSYP DAAAAPTAAS NGSPPPPQAA
160 170 180 190 200
GPWARRAADL VAPALGQGQG QGAVVMPAPS SPPAAVSPAA GKKSRRGPRS
210 220 230 240 250
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF
260 270 280 290 300
RGLDADINFQ LKDYEDDLKQ MKNWTKEEFV HILRRQSTGF ARGSSKYRGV
310 320 330 340 350
TLHKCGRWEA RMGQLLGKKY IYLGLFDSEI EAARAYDRAA IRFNGPDAVT
360 370 380 390 400
NFDSSSYDGD VPLPTAIEKD VVDGDILDLN LRISQPNVHD LKSDGTLTGF
410 420 430 440 450
GLGCNSPEAS SSIVSQPISP QWPVHPHSTP MQLQHPHLYA SPCPGFFVNL
460 470 480 490 500
REAPMEEEKR AERAGPEPAF PSWAWQTQGS PAPFLPATAT AASSGFSTAA
510 520 530
TTTGVDAATA ARSVPPSLSG GPRQLFSGYQ LQLRFPPTA
Length:539
Mass (Da):57,390
Last modified:September 1, 2009 - v1
Checksum:iE8095A93A19F49BB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000761 Genomic DNA Translation: EER96101.1
RefSeqiXP_002459580.1, XM_002459535.1

Genome annotation databases

EnsemblPlantsiEER96101; EER96101; SORBI_3002G083600
GeneIDi8078470
GrameneiEER96101; EER96101; SORBI_3002G083600
KEGGisbi:8078470

Similar proteinsi

Entry informationi

Entry nameiC5XDI6_SORBI
AccessioniPrimary (citable) accession number: C5XDI6
Entry historyiIntegrated into UniProtKB/TrEMBL: September 1, 2009
Last sequence update: September 1, 2009
Last modified: July 18, 2018
This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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