UniProtKB - C5X1S7 (C5X1S7_SORBI)
Protein
CMP/dCMP-type deaminase domain-containing protein
Gene
SORBI_3001G388800
Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Functioni
GO - Molecular functioni
- tRNA-specific adenosine-34 deaminase activity Source: GO_Central
- zinc ion binding Source: InterPro
GO - Biological processi
- tRNA wobble adenosine to inosine editing Source: GO_Central
Keywordsi
Ligand | Metal-bindingARBA annotation, ZincARBA annotation |
Names & Taxonomyi
Protein namesi | Recommended name: CMP/dCMP-type deaminase domain-containing proteinInterPro annotation |
Gene namesi | ORF Names:SORBI_3001G388800Imported |
Organismi | Sorghum bicolor (Sorghum) (Sorghum vulgare)Imported |
Taxonomic identifieri | 4558 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogonodae › Andropogoneae › Sorghinae › Sorghum |
Proteomesi |
|
Subcellular locationi
Nucleus
- nucleus Source: EnsemblPlants
Other locations
- cytoplasm Source: EnsemblPlants
- tRNA-specific adenosine-34 deaminase complex Source: GO_Central
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 1 – 119 | CMP/dCMP-type deaminaseInterPro annotationAdd BLAST | 119 |
Phylogenomic databases
eggNOGi | KOG1018, Eukaryota |
HOGENOMi | CLU_025810_8_1_1 |
InParanoidi | C5X1S7 |
OMAi | MNGTRHA |
OrthoDBi | 1616309at2759 |
Family and domain databases
InterProi | View protein in InterPro IPR016192, APOBEC/CMP_deaminase_Zn-bd IPR002125, CMP_dCMP_dom IPR016193, Cytidine_deaminase-like |
Pfami | View protein in Pfam PF00383, dCMP_cyt_deam_1, 1 hit |
SUPFAMi | SSF53927, SSF53927, 1 hit |
PROSITEi | View protein in PROSITE PS00903, CYT_DCMP_DEAMINASES_1, 1 hit PS51747, CYT_DCMP_DEAMINASES_2, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All
C5X1S7-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MATAFMEQAL EQAKFALDNL EVPVGCVIVE DGKVISSGSN KTNATRNATR
60 70 80 90 100
HAEMEAIDVL LREWQSMGLD QTQVAEKFAG CDLYVTCEPC IMCATALSII
110 120 130 140 150
GIREVYFGCA NDKFGGCGSI MSLHKGDTSS SDDLSGSQAS KPKGFKCTGG
160 170 180
IMAEEAVALF RCFYEQGNPN APRPHRPVRT PQQ
Computationally mapped potential isoform sequencesi
There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A1Z5S9R9 | A0A1Z5S9R9_SORBI | CMP/dCMP-type deaminase domain-cont... | SORBI_3001G388800 | 138 | Annotation score: | ||
A0A1Z5SAB7 | A0A1Z5SAB7_SORBI | CMP/dCMP-type deaminase domain-cont... | SORBI_3001G388800 | 130 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CM000760 Genomic DNA Translation: EER94939.1 |
RefSeqi | XP_002467941.1, XM_002467896.1 |
Genome annotation databases
EnsemblPlantsi | EER94939; EER94939; SORBI_3001G388800 |
GeneIDi | 8083697 |
Gramenei | EER94939; EER94939; SORBI_3001G388800 |
KEGGi | sbi:8083697 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CM000760 Genomic DNA Translation: EER94939.1 |
RefSeqi | XP_002467941.1, XM_002467896.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 4558.Sb01g036850.1 |
Genome annotation databases
EnsemblPlantsi | EER94939; EER94939; SORBI_3001G388800 |
GeneIDi | 8083697 |
Gramenei | EER94939; EER94939; SORBI_3001G388800 |
KEGGi | sbi:8083697 |
Phylogenomic databases
eggNOGi | KOG1018, Eukaryota |
HOGENOMi | CLU_025810_8_1_1 |
InParanoidi | C5X1S7 |
OMAi | MNGTRHA |
OrthoDBi | 1616309at2759 |
Gene expression databases
ExpressionAtlasi | C5X1S7, baseline and differential |
Family and domain databases
InterProi | View protein in InterPro IPR016192, APOBEC/CMP_deaminase_Zn-bd IPR002125, CMP_dCMP_dom IPR016193, Cytidine_deaminase-like |
Pfami | View protein in Pfam PF00383, dCMP_cyt_deam_1, 1 hit |
SUPFAMi | SSF53927, SSF53927, 1 hit |
PROSITEi | View protein in PROSITE PS00903, CYT_DCMP_DEAMINASES_1, 1 hit PS51747, CYT_DCMP_DEAMINASES_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | C5X1S7_SORBI | |
Accessioni | C5X1S7Primary (citable) accession number: C5X1S7 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | September 1, 2009 |
Last sequence update: | September 1, 2009 | |
Last modified: | December 2, 2020 | |
This is version 57 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |