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Entry version 52 (10 Apr 2019)
Sequence version 1 (28 Jul 2009)
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Protein
Submitted name:

Uncharacterized protein

Gene

Pmar_PMAR007696

Organism
Perkinsus marinus (strain ATCC 50983 / TXsc)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:Pmar_PMAR007696Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPerkinsus marinus (strain ATCC 50983 / TXsc)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri423536 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaAlveolataPerkinsozoaPerkinseaPerkinsidaPerkinsidaePerkinsus

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini11 – 196Helicase ATP-bindingInterPro annotationAdd BLAST186
Domaini440 – 582Helicase C-terminalInterPro annotationAdd BLAST143
Domaini1136 – 1268RNase IIIInterPro annotationAdd BLAST133

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1356 – 1376Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0701 Eukaryota
COG1111 LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
C5LMV9

Database of Orthologous Groups

More...
OrthoDBi
1337630at2759

Family and domain databases

Conserved Domains Database

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CDDi
cd00079 HELICc, 1 hit
cd00593 RIBOc, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.1520.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
PF00636 Ribonuclease_3, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00535 RIBOc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits
SSF69065 SSF69065, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS50142 RNASE_3_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C5LMV9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKLREYQAEV LDKIRQHRST VAFMPTGSGK TLVAVRLLHE RVEVQRRRQE
60 70 80 90 100
EGELKKACIF TAPNKVLCHQ QAKYIEKHLG HADAKVIILT GEMKDTVSWE
110 120 130 140 150
EEEWAKTLRE SSVLVCVPEV LRRALESGYV KADSIDTIIF DECHHCVSKN
160 170 180 190 200
GANSGHAYCH LAQLAKGAER FVGLTASPLN CKRVDVDENL KQLRKVLALG
210 220 230 240 250
GECEVVRPTV NAEELSRWVR TPELEFKYFT SSTYAPSCLR FVQRCDADCD
260 270 280 290 300
EVHKWMCSAY HRVSWLEEFY SLRRSMRTLG QDAADFGMPP ITTQLSSRDL
310 320 330 340 350
PLHILSRYCE MMGQMGRILH EVDDIDAHAV PEAYNKPKSS INIDNLRRRV
360 370 380 390 400
SRLEEFCKVN TDIELFNEPV ANAVRTSLFE MCMAICVGAD LQGFLQDHAP
410 420 430 440 450
TYKSLEDLKR WIREALVPRL LEVGGDADKL FKMGELLYVG GDSELPDYNA
460 470 480 490 500
AIIFVNQRLL ARAIAASLDC FYCVGGRYES ASTQAEAIER FKETAKRDDK
510 520 530 540 550
DAILIATSVC DEGVDVPVCD RVILWDMPPN VRCYIQRRGR ARSLEPPSKF
560 570 580 590 600
FLMVGDQEEE KGCAKAALTD FQNKEEQMAR LVDFWIQCGT DDDEESEDAG
610 620 630 640 650
IVPAVVIGRD GVRITCRRAK EVLFTFCSTL RATDEFFSPE PWIYTESDED
660 670 680 690 700
SGRYRTVVVL PSSVNPPAAR WAMSEWQPSE AKAVREACAR QLVKLDRLPW
710 720 730 740 750
VTPQFRNGYR SKPRGSADED DDNSVSQELL EQTRRSLSTL PILSSPVFKK
760 770 780 790 800
PVKSVGRMFA YSLTASWDGD SISMQSQQQV RYARSRQQIS AVNKLMLLTP
810 820 830 840 850
GPIDSVVPHA VGHIPLSATG MGRANTSMGN VLISLRPSEH HGNPSAAMGV
860 870 880 890 900
DASLMGSLWG FHKEIFPEGE GGPCSDWHDC EDERDFWLLV PNAGVDRAGF
910 920 930 940 950
DEVLDAFKDD RRLLVDFTNT VRELCRMVFS YNLLGLPPLN PRVLCEVLTP
960 970 980 990 1000
KRCQALVDSE RYEYLGNSIL QLVVSESVWS KQFSAGGASL EGKLTSDRQK
1010 1020 1030 1040 1050
IISRKRMSQK AVEGGILSLM QMRSPAAVGV GGAATKDILV SITSAARSCM
1060 1070 1080 1090 1100
LALIGALCDS HGVDCVVKAV TKFKLVEIVP ACGLLPHSSA GEGATLDDWL
1110 1120 1130 1140 1150
LPDDFPQLVR GKLREPTVTY DTLSAAQQGS SVDIGGYVFE KHPWLLTESL
1160 1170 1180 1190 1200
THASVTSVSA SYSNERLEWI GDAVLGAVVL QWLFKLEKPP KNIVEAFTAN
1210 1220 1230 1240 1250
TCNAHLAKVA VERLGVPDLF NAFSAPLLRA VNRFVNELFS GRAVVRRGPK
1260 1270 1280 1290 1300
PLADCVEAII GAVWLDAGGL AGGGWEAATT FITKNVVAEP DQPLSDIVID
1310 1320 1330 1340 1350
LTSPLACAEP SVSVSESASA DTIPRKDQGV KRPAASTEES GSNKREAVDA
1360 1370 1380 1390
VDSEEAKALR AQLTRLSNTL DADELRLVID GIKSRIARRR SSGQ
Length:1,394
Mass (Da):154,370
Last modified:July 28, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBF230CB0178F74BB
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
GG683573 Genomic DNA Translation: EER02000.1

NCBI Reference Sequences

More...
RefSeqi
XP_002769282.1, XM_002769236.1

Genome annotation databases

Ensembl protists genome annotation project

More...
EnsemblProtistsi
EER02000; EER02000; Pmar_PMAR007696

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
9054628

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG683573 Genomic DNA Translation: EER02000.1
RefSeqiXP_002769282.1, XM_002769236.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEER02000; EER02000; Pmar_PMAR007696
GeneIDi9054628

Phylogenomic databases

eggNOGiKOG0701 Eukaryota
COG1111 LUCA
InParanoidiC5LMV9
OrthoDBi1337630at2759

Family and domain databases

CDDicd00079 HELICc, 1 hit
cd00593 RIBOc, 1 hit
Gene3Di1.10.1520.10, 2 hits
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
PF00636 Ribonuclease_3, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00535 RIBOc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
SSF69065 SSF69065, 2 hits
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS50142 RNASE_3_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC5LMV9_PERM5
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C5LMV9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: April 10, 2019
This is version 52 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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