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Entry version 43 (13 Feb 2019)
Sequence version 1 (28 Jul 2009)
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Protein
Submitted name:

ImcF-like protein

Gene

bglu_2g06000

Organism
Burkholderia glumae (strain BGR1)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
BGLU626418:GJI5-3906-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
ImcF-like proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:bglu_2g06000Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBurkholderia glumae (strain BGR1)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri626418 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002187 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei24 – 45HelicalSequence analysisAdd BLAST22
Transmembranei65 – 86HelicalSequence analysisAdd BLAST22
Transmembranei392 – 415HelicalSequence analysisAdd BLAST24

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
626418.bglu_2g06000

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini450 – 779IcmF-relatedInterPro annotationAdd BLAST330
Domaini918 – 1114IcmF_CInterPro annotationAdd BLAST197

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
COG3523 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000124235

KEGG Orthology (KO)

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KOi
K11891

Identification of Orthologs from Complete Genome Data

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OMAi
WEQAVQP

Database of Orthologous Groups

More...
OrthoDBi
393769at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR009612 IcmF-related
IPR010623 IcmF_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06761 IcmF-related, 1 hit
PF06744 IcmF_C, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C5AMJ0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMNARNNMQI LGTAEAETTE TSRLLAWGPI FLALILAGVA FALVWFKGAL
60 70 80 90 100
FGVLTREAKL GASVWIFLAL VAVLLLHIGL LFGGAYRLVG RVFRAEVGDR
110 120 130 140 150
DAAVTQTKTL KCDARLQTVC DELRATRGWW WRYRTRWLLL TGTDALIEDV
160 170 180 190 200
APGLKRAGVM PVADAILVHA APDGIDVGAW RRQIRQLRRR RPVDSVVHVT
210 220 230 240 250
DANAPETELP RALATLATDL GWAAPVTLLH AVPATGGHPE TFEAIGAFPG
260 270 280 290 300
PSLGGTQPAS VLREQLAVIG RHTADAGVRL CVTPTRITYL AQISQYIDEQ
310 320 330 340 350
RESIISGWNA LFASHWYRSR LAGVIFAPVF ETSAAVPTPV PVVPIAPAGA
360 370 380 390 400
EAAAVVPTGT QQPVMFQHQP AALLPAWRTI ARRRDTGRRV GFYWPNVLAW
410 420 430 440 450
FVTVAAVTWC AWMTVSFVGN RQLAREARAT ANAAAEARPQ TAVAWRAQLA
460 470 480 490 500
LQQLIEKLEY RQQHGAPWYL RGGLSRNDEV LAGLWPPYRI AATRNLQTPV
510 520 530 540 550
VQTIGDLLKA AGQTRADSLE SQDTRSSTYN ALKTYLMLGD PSRAEPAFLK
560 570 580 590 600
RMLVSQWPRP VEMPLGERDD TGLRLAGFYA DHLKAHPGWR IGLNNGLVTS
610 620 630 640 650
TRNMLVTQMG LASSDDTVYQ GIIEEARGRY ADASLETLLA GADARGLFTT
660 670 680 690 700
SQTVPGIYTR AAWDGMIAAA INKAASERRT SGDWVLTGAP PAQTIGNMLS
710 720 730 740 750
RGAIRTAAVI DEKHAAEDLK QRLTARYFAE YTAAWQGMLN SVRWQPAANL
760 770 780 790 800
NGSIEQLTRL ADAQTSPLIA LMKAIQYQAQ AGRPSQALAD TLVRKAQSLI
810 820 830 840 850
GRDDQAAAPT VNPLDKSFGP LLALMGDTAA VPAAGGKGNP AANIALNGVS
860 870 880 890 900
LSRYLTAVTT MRLKLQQIAG SPDAQTMARS LAQAVFQGKL SELSQARDDA
910 920 930 940 950
ALTAASLGTA WSGFGDAVFA QPLEAAWQTI LQPAAASLNE AWRASVAAPF
960 970 980 990 1000
NAAMSGRYPF FDTNADASFA ELGRYVRPDT GLIARFFATQ LAGVLKLEGD
1010 1020 1030 1040 1050
HWTPNELAPQ ALQFDPTFLT GIRQLSTVGA QLYVQGDARE RFEMMALPTP
1060 1070 1080 1090 1100
NVTRSELSVD GKQIVYFNQQ ENWTPLAWPG TGLNGHAGLT WQTLDAGLRQ
1110 1120 1130 1140 1150
AFDSTGDWAF LRLLAKADMK QLDSTRYQVT WNTANAEPLS YVMRTQIGAG
1160 1170 1180
PLELLKLRGF RMPERIFIVG KAGVVPVLPP LPPELQP
Length:1,187
Mass (Da):128,758
Last modified:July 28, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8ADA0694170C9CAF
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP001504 Genomic DNA Translation: ACR31041.1

NCBI Reference Sequences

More...
RefSeqi
WP_012733436.1, NC_012721.2

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ACR31041; ACR31041; bglu_2g06000

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
bgl:bglu_2g06000

Pathosystems Resource Integration Center (PATRIC)

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PATRICi
fig|626418.3.peg.838

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001504 Genomic DNA Translation: ACR31041.1
RefSeqiWP_012733436.1, NC_012721.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi626418.bglu_2g06000

Genome annotation databases

EnsemblBacteriaiACR31041; ACR31041; bglu_2g06000
KEGGibgl:bglu_2g06000
PATRICifig|626418.3.peg.838

Phylogenomic databases

eggNOGiCOG3523 LUCA
HOGENOMiHOG000124235
KOiK11891
OMAiWEQAVQP
OrthoDBi393769at2

Enzyme and pathway databases

BioCyciBGLU626418:GJI5-3906-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR009612 IcmF-related
IPR010623 IcmF_C
PfamiView protein in Pfam
PF06761 IcmF-related, 1 hit
PF06744 IcmF_C, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC5AMJ0_BURGB
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C5AMJ0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: February 13, 2019
This is version 43 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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