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Protein
Submitted name:

RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III

Gene

PAS_chr3_0157

Organism
Komagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and IIIImported
Gene namesi
Ordered Locus Names:PAS_chr3_0157Imported
OrganismiKomagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)Imported
Taxonomic identifieri644223 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesPhaffomycetaceaeKomagataella
Proteomesi
  • UP000000314 Componenti: Chromosome 3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi644223.XP_002492363.1

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5X4ZX-ray7.80E/Q1-214[»]
5X50X-ray4.29E1-214[»]
5X51X-ray7.00E/Q1-214[»]
5XOGX-ray3.00E1-214[»]
5XONelectron microscopy3.83E1-214[»]
ProteinModelPortaliC4R3P8
SMRiC4R3P8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 98RNA_pol_Rpb5_NInterPro annotationAdd BLAST92
Domaini141 – 213RNA_pol_Rpb5_CInterPro annotationAdd BLAST73

Phylogenomic databases

eggNOGiKOG3218 Eukaryota
COG2012 LUCA
HOGENOMiHOG000205213
InParanoidiC4R3P8
KOiK03013
OMAiNQLMRIQ
OrthoDBiEOG092C4CGV

Family and domain databases

Gene3Di3.40.1340.10, 1 hit
3.90.940.20, 1 hit
HAMAPiMF_00025 RNApol_RpoH_RPB5, 1 hit
InterProiView protein in InterPro
IPR014381 DNA_RNA_pol_RPB5_euk/virus
IPR005571 RNA_pol_Rpb5_N
IPR036710 RNA_pol_Rpb5_N_sf
IPR000783 RNA_pol_subH/Rpb5_C
IPR020608 RNA_pol_subH/Rpb5_CS
IPR035913 RPB5-like
IPR020609 RpoH/RPB5
PfamiView protein in Pfam
PF01191 RNA_pol_Rpb5_C, 1 hit
PF03871 RNA_pol_Rpb5_N, 1 hit
PIRSFiPIRSF000747 RPB5, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD005155 RNA_pol_subH/Rpb5_C, 1 hit
SUPFAMiSSF53036 SSF53036, 1 hit
SSF55287 SSF55287, 1 hit
PROSITEiView protein in PROSITE
PS01110 RNA_POL_H_23KD, 1 hit

Sequencei

Sequence statusi: Complete.

C4R3P8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDNNRIISR LWRSFRTVKE MAADRGYFIS QEEMDQSLEE FRSKICDSMG
60 70 80 90 100
NPQRKLMSFL ANPTPEALEK YSDLGTLWVE FCDEPSVGIK TMRNFCLRIQ
110 120 130 140 150
EKNFSTGIFI YQNNITPSAN KMIPTVSPAI IETFQESDLV VNITHHELVP
160 170 180 190 200
KHIRLSDGEK SQLLQRYKLK ESQLPRIQRE DPVARYLGLK RGQVVKIIRR
210
SETSGRYASY RICL
Length:214
Mass (Da):24,928
Last modified:July 7, 2009 - v1
Checksum:iD3C801961F5642AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN392321 Genomic DNA Translation: CAY70112.1
RefSeqiXP_002492363.1, XM_002492318.1

Genome annotation databases

EnsemblFungiiCAY70112; CAY70112; PAS_chr3_0157
GeneIDi8199432
KEGGippa:PAS_chr3_0157

Similar proteinsi

Entry informationi

Entry nameiC4R3P8_KOMPG
AccessioniPrimary (citable) accession number: C4R3P8
Entry historyiIntegrated into UniProtKB/TrEMBL: July 7, 2009
Last sequence update: July 7, 2009
Last modified: April 25, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

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