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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Rickettsia africae (strain ESF-5)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciRAFR347255:G1GVG-505-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:RAF_ORF0293
OrganismiRickettsia africae (strain ESF-5)
Taxonomic identifieri347255 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
Proteomesi
  • UP000002305 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10002149631 – 15550S ribosomal protein L13Add BLAST155

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Structurei

3D structure databases

SMRiC3PMS9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000225286
KOiK02871
OMAiVLMGKHK

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR023563 Ribosomal_L13_CS
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

C3PMS9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTYSAKPSE IEKKWWVIDA KNIVLGRLAS RVANMLRGKH KPSFTPHLDC
60 70 80 90 100
GDNIIIINAG HVKLTGKKAN PKDGKIYYRY TGFPGGIKDT TAGKILSGKH
110 120 130 140 150
PERVIKMAVK RMITRNALGA KQMSNLYVYA NGDHPHMAQQ PTVYDFASQN

PKNKK
Length:155
Mass (Da):17,333
Last modified:June 16, 2009 - v1
Checksum:i4F9BE6D385116478
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001612 Genomic DNA Translation: ACP53239.1
RefSeqiWP_012719497.1, NC_012633.1

Genome annotation databases

EnsemblBacteriaiACP53239; ACP53239; RAF_ORF0293
KEGGiraf:RAF_ORF0293

Similar proteinsi

Entry informationi

Entry nameiRL13_RICAE
AccessioniPrimary (citable) accession number: C3PMS9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: June 16, 2009
Last modified: February 28, 2018
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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