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Entry version 28 (18 Sep 2019)
Sequence version 2 (22 Nov 2017)
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Protein

Polyprotein-FSD

Gene
N/A
Organism
Solenopsis invicta virus 3 (SINV-3)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Capsid protein VP1: Assembles with VP1-FSD and VP2 to form an icosahedral capsid. VP1 is about 5 time more abundant than VP1-FSD in the virion.1 Publication
Capsid protein VP1-FSD: Assembles with VP1 and VP2 to form an icosahedral capsid. VP1 is about 5 time more abundant than VP1-FSD in the virion.1 Publication
Capsid protein VP2: Assembles with VP1 and VP1-FSD to form an icosahedral capsid.1 Publication
RNA-directed RNA polymerase: Replicates genomic and antigenomic RNA.PROSITE-ProRule annotationBy similarity

Miscellaneous

Capsid protein VP1: A sgRNA is also expressed which encloses the VP1 capsid protein and probably a leader protein.1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1258For 3C-like protease activityPROSITE-ProRule annotation1 Publication1
Active sitei1295For 3C-like protease activityPROSITE-ProRule annotation1 Publication1
Active sitei1381For 3C-like protease activityPROSITE-ProRule annotation1 Publication1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi396 – 403ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase, Nucleotidyltransferase, Protease, RNA-directed RNA polymerase, Thiol protease, Transferase
Biological processViral RNA replication
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Polyprotein-FSD1 Publication
Cleaved into the following 5 chains:
Helicase1 Publication (EC:3.6.4.13Curated)
3C-like protease1 Publication (EC:3.4.22.-Curated)
Short name:
3CL-PRO
RNA-directed RNA polymerasePROSITE-ProRule annotation (EC:2.7.7.48PROSITE-ProRule annotation)
Capsid protein VP1-FSD1 Publication
Capsid protein VP21 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSolenopsis invicta virus 3 (SINV-3)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri631345 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaInvictavirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiSolenopsis invicta (Red imported fire ant) (Solenopsis wagneri) [TaxID: 13686]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000207613 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Capsid protein VP1-FSD :
  • Virion 1 Publication
Capsid protein VP2 :
  • Virion 1 Publication

GO - Cellular componenti

  • virion Source: UniProtKB-SubCell

Keywords - Cellular componenti

Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004424451 – 3390Polyprotein-FSDAdd BLAST3390
ChainiPRO_00004424461 – ?Helicase
ChainiPRO_0000442447? – ?14323C-like protease
ChainiPRO_0000442448?1433 – 2345RNA-directed RNA polymeraseAdd BLAST913
ChainiPRO_00004424492346 – 3016Capsid protein VP1-FSDAdd BLAST671
ChainiPRO_00004424503017 – 3390Capsid protein VP2Add BLAST374

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei2346N-acetylmethionine; by host1 Publication1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Capsid protein VP1-FSD: N-acetylated.1 Publication
Polyprotein-FSD: Proteolytic cleavages of the polyprotein yield mature proteins.1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections (‘Function’, ‘PTM / Processing’, ‘Pathology and Biotech’) according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei2345 – 2346Cleavage1 Publication2
Sitei3016 – 3017Cleavage1 Publication2

Keywords - PTMi

Acetylation

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
C1JCT2

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini369 – 543SF3 helicasePROSITE-ProRule annotationAdd BLAST175
Domaini1206 – 1423Peptidase C3PROSITE-ProRule annotationAdd BLAST218
Domaini1914 – 2042RdRp catalyticPROSITE-ProRule annotationAdd BLAST129

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1176 – 1179Poly-ArgSequence analysis4
Compositional biasi3038 – 3092Gln-richPROSITE-ProRule annotationAdd BLAST55
Compositional biasi3122 – 3155Asn-richPROSITE-ProRule annotationAdd BLAST34

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
2102at10239

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.20, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR000605 Helicase_SF3_ssDNA/RNA_vir
IPR014759 Helicase_SF3_ssRNA_vir
IPR027417 P-loop_NTPase
IPR009003 Peptidase_S1_PA
IPR001205 RNA-dir_pol_C
IPR007094 RNA-dir_pol_PSvirus
IPR029053 Viral_coat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00680 RdRP_1, 1 hit
PF00910 RNA_helicase, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50494 SSF50494, 1 hit
SSF52540 SSF52540, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51874 PCV_3C_PRO, 1 hit
PS50507 RDRP_SSRNA_POS, 1 hit
PS51218 SF3_HELICASE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by ribosomal frameshifting. AlignAdd to basket
Isoform Polyprotein-FSD (identifier: C1JCT2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSEKTQTFVQ NETHVLDMTS DFKSDLSLEK VTSSVEQTDD LVSKIINNND
60 70 80 90 100
LDIKDLSFLR NLLLSTLQYL GIAKFVAINI TLSILSILML LINSCAKFTR
110 120 130 140 150
IVNLSSHILN IITTLGLYFQ VSSMEIEEIT QTFENEFGTY DDDKILSHYI
160 170 180 190 200
KICNLPNRKD VYEYISLNDL KYKIKLPDIS FYELKNDILS KNKNLHLWIF
210 220 230 240 250
QKFTDEFLAM WFGVQPYRIS NLREMLVISR QGFIPKDLFN EIRKLCNMGV
260 270 280 290 300
SVIISFIQSK LFDEPFKKRD CTQALKDASV ISSPFDTLWN LISKQVCDNS
310 320 330 340 350
AEERFTQTIL DFTSEFDNFL GIPNYKFAKN QKLVNTISKS LDACAKFIRD
360 370 380 390 400
CPKDKQTEIF PLQGLHTATV KRRNEILTNV MPKFARQEPF VVLFQGPGGI
410 420 430 440 450
GKTHLVQQLA TKCVNSFYQD HEDDYIEISP DDKYWPPLSG QRVAFFDEAG
460 470 480 490 500
NLNDLTEDLL FRNIKSICSP AYFNCAAADI EHKISPCPFE LVFATVNTDL
510 520 530 540 550
DTLQSKISST FGQASVFPIW RRCIVVECSW NEKELGPFNY KNPSGHRSDY
560 570 580 590 600
SHITMNYMSY DDKTQKLALE KEINFDTLFD MIRLRFRKKQ QEHDTKISIL
610 620 630 640 650
NNEIQRQSNS KQHFSVCLYG EPGQGKTYNL NKLITTFANA TNLKIGSEEK
660 670 680 690 700
PSIHIFDDYI KDENDENCSK FMDIYNNKLP NNSVIFSATN VYPKTHFFPT
710 720 730 740 750
FFLTNLIYAF IQPFKQVGLY RRLGFDGYTD IPNSSVNAPI FVQNFKFYER
760 770 780 790 800
KQHICYFLSL EFLKNIICYI FFFLYFPLKF IKKIDLIEIK DVNKYVYDRY
810 820 830 840 850
INFLSLSKQI EIVEYPPNLE NVEFDFRFNM NKFHRVSFNN PFELDKYIHF
860 870 880 890 900
NKNSYENLLH FDWKMYLSPR VKHRLALSYE KFFITISEVN KEIIIEELKR
910 920 930 940 950
YVLLFKQFNI DPNMEINLGE YGSFYYINGK IHLMTINIES NVSEIPVFTD
960 970 980 990 1000
GDYVYISEHK IPVIDLFDNI NINSKYNLSF DQSIALNSFK TGDSFYSNAK
1010 1020 1030 1040 1050
VRKSLSKFVL LNYQTKFKLY LKEAKDKVKN FIETPIGHLL SILLTIFVIC
1060 1070 1080 1090 1100
YASFKIYSKF SNFFSKDQAI EDQRKGEKKI KKITNYDSDG VQPQRKGEKK
1110 1120 1130 1140 1150
IKKVTNYDSD GVQPQSNVKV EEEIKLVFDP TGQKLLFGND FTSELETLVE
1160 1170 1180 1190 1200
LEKDDEEFTK SKIDNKSMAG LRREVRRRRY ARSKKAQIEK QEVLTLPDVN
1210 1220 1230 1240 1250
GFEGGKPYFQ IAEEKARKNL CQIYMIANNE NCIASKFSDH IVCYGLFVFK
1260 1270 1280 1290 1300
KRLASVGHIV EALKCAPGYN LYAGCDQFNG KLYKMNLVRN YRKRELSVWD
1310 1320 1330 1340 1350
VDCPNDFVDL TSFFIPKEEL YDAENCNTVL GRFGMNKREV YLYGNCEFIQ
1360 1370 1380 1390 1400
EFFKVDNKGA QEFGYIDWAT VDITLTTGGD CGLPYYICER KKFHNKIMGL
1410 1420 1430 1440 1450
HFAGNNVNHK TIGMSALIYK EDLVVWKGAE RQSKCKFCDV KDIIIAQPDI
1460 1470 1480 1490 1500
PKEKYKGYNH EIVWNSLHES SPTTLNEELE HYLNIFPKFT GTIIKHSGDK
1510 1520 1530 1540 1550
FYGSVKHSHT QFISKFKTEL TVTNGWKLST AGDCQFESNH ISPNTEVMYR
1560 1570 1580 1590 1600
VVDVQFNSIF KAFKSQPYIK NFRLIANVYE KDGKQRVTIL TIIPVSDFNV
1610 1620 1630 1640 1650
KQQTVRQALV PLHLNEDEEV YVTEDVSDIF KTAIKRKQRG ILPDVPYETV
1660 1670 1680 1690 1700
ENETVEILGI THRNMTPEPA QMYKPTPFYK LALKFNLDHK LPVNFNMKDC
1710 1720 1730 1740 1750
PQEQKDMMVL DRLGQPNPRI TQSLKWAHKD YSPDYELRKY VKEQYMCNIM
1760 1770 1780 1790 1800
EYYAGCNLLT EEQILKGYGP NHRLYGALGG MEIDSSIGWT MKELYRVTKK
1810 1820 1830 1840 1850
SDVINLDSNG NYSFLNNEAA QYTQELLKIS MEQAHNGQRY YTAFNELMKM
1860 1870 1880 1890 1900
EKLKPSKNFI PRTFTAQDLN GVLMERWILG EFTARALAWD ENCAVGCNPY
1910 1920 1930 1940 1950
ATFHKFATKF FKFKNFFSCD YKNFDRTIPK CVFEDFRDML IQANPHMKNE
1960 1970 1980 1990 2000
IYACFQTIID RIQVSGNSIL LVHGGMPSGC VPTAPLNSKV NDIMIYTAYV
2010 2020 2030 2040 2050
NILRRADRGD ITSYRYYRDL VCRLFYGDDV IIAVDDSIAD IFNCQTLSEE
2060 2070 2080 2090 2100
MKILFGMNMT DGSKSDIIPK FETIETLSFI SRFFRPLKHQ ENFIVGALKK
2110 2120 2130 2140 2150
ISIQTHFYYA TDDTPEHFGQ VFKTIQEEAA LWEEEYFNKI QSYIQEIIRK
2160 2170 2180 2190 2200
FPEISKFFNF ESYKSIQKRY IMNGWNEFVK LEKLDLNLNK KKSSKVTGIH
2210 2220 2230 2240 2250
SKQYSKFLKF LSRIENEKAA LEGNFNKESV NTWYFKMSKA MHLNEIFQKG
2260 2270 2280 2290 2300
LISKPLAEFY FNEGQKMWDC NITFRRSKDD LPFTFSGSGT TKACAREQAA
2310 2320 2330 2340 2350
EEALVLFSQE DEIVRQINDI QSDCKFCKKM IRYKKLLSGV SIQRQMNVSK
2360 2370 2380 2390 2400
ITENHVPSAG MMATDPSVAP DSGIATNTQT PSISRVLNPI ARALDNPAGT
2410 2420 2430 2440 2450
GAPFDKHTYV YNVFTRWPEM STVVNKSLAA GAEVFKISLD PNKLPKRILQ
2460 2470 2480 2490 2500
YIQFHKTIIP QIEVQILIGG AAGTVGWLKV GWVPDASTAK KYSLDDLQLV
2510 2520 2530 2540 2550
ASETINLNST ITMSMIINDS RRNGMFRLTK SDPEPWPGIV CLVEHPITNV
2560 2570 2580 2590 2600
QRNDDVNYPV IVSVRLGPDC QLMQPYNDLN LSGGTDPDPD PEPDPDPEPG
2610 2620 2630 2640 2650
PDPEPGVDEL DLSKYIPNQL IDLLICNSYV PNNVSVDFLS TYPNLNFSIH
2660 2670 2680 2690 2700
NITDVVVSSK PYTLALFETE SQINSASVWR GDLTQLSVFI QYKFYTRVEA
2710 2720 2730 2740 2750
YNKVTTVHTD KWTPNFDGTV YKPVDVKIEH AYGTYELTTM WLTSYGLVME
2760 2770 2780 2790 2800
WSLDESRVFY GTYKTDSNGR RWLIDGNTPI ARSDHCFIVS SPDLLSDDKA
2810 2820 2830 2840 2850
YYNNPIGAKQ GGKLVDGAQI YRIFKTESGG YRSDPFVPET YWPSETPYNA
2860 2870 2880 2890 2900
DWSGVKMPYQ IRKVIQTGNN LAGKHLDGDL KMCAMIRQGS SSTQSTDNYF
2910 2920 2930 2940 2950
YPIYVHNFSA LLKQMNLILK ERKTKYIKFD LQVGGKPFAQ MGFGDGAFIG
2960 2970 2980 2990 3000
RTTMFRQIRA AITNVILLKN IVGVDDLSGL QALPTSGFAD WVVKAQSTNS
3010 3020 3030 3040 3050
KFLNDFYNDK ISIERQASLG IAAAIGAGQG LFGGLSAQWQ WQQQADWSRQ
3060 3070 3080 3090 3100
MQRERLDMME KLANINNQAR LNQLTQSGAQ QRITQQAAYQ QQMNALGAGS
3110 3120 3130 3140 3150
VSAQNGMYTP SNYTPLPSYK SNTTNYYNNS VYHTDNNITN NPSNTSLTNN
3160 3170 3180 3190 3200
INNFNPELFQ QQRERMPTPS EAYDNSKGFV PQPGTSKSIA TENINPNYKD
3210 3220 3230 3240 3250
EEHIYEPIEQ QNHEYADIDY NAMNISRENK NSSNFGNVGI LDHQYADIDY
3260 3270 3280 3290 3300
DAMKIARDQQ NSSKFGNVGV LNHQYAELDF SKNNTRKNSQ ILDNSLYSKT
3310 3320 3330 3340 3350
QPSSKMIDNS LYGINPNKMV ENQNYEPASM ERKNSIYSSN LNSSNNLKFN
3360 3370 3380 3390
NIPNFKGPTN LNISGAKPAG FGSGIIQPAI NKYTDFSKPN
Note: Produced by -1 ribosomal frameshifting.1 Publication
Length:3,390
Mass (Da):390,107
Last modified:November 22, 2017 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i03A54D0B18E90BF6
GO
Isoform Polyprotein (identifier: C1JCT1-1) [UniParc]FASTAAdd to basket
The sequence of this isoform can be found in the external entry C1JCT1.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.
Note: Produced by conventional translation.1 Publication
Length:2,580
Mass (Da):299,117
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
FJ528584 Genomic RNA Translation: ACO37272.1

NCBI Reference Sequences

More...
RefSeqi
YP_002790880.2, NC_012531.1 [C1JCT2-1]

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
7751222

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:7751222

Keywords - Coding sequence diversityi

Ribosomal frameshifting

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FJ528584 Genomic RNA Translation: ACO37272.1
RefSeqiYP_002790880.2, NC_012531.1 [C1JCT2-1]

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

PTM databases

iPTMnetiC1JCT2

Genome annotation databases

GeneIDi7751222
KEGGivg:7751222

Phylogenomic databases

OrthoDBi2102at10239

Family and domain databases

Gene3Di2.60.120.20, 1 hit
InterProiView protein in InterPro
IPR000605 Helicase_SF3_ssDNA/RNA_vir
IPR014759 Helicase_SF3_ssRNA_vir
IPR027417 P-loop_NTPase
IPR009003 Peptidase_S1_PA
IPR001205 RNA-dir_pol_C
IPR007094 RNA-dir_pol_PSvirus
IPR029053 Viral_coat
PfamiView protein in Pfam
PF00680 RdRP_1, 1 hit
PF00910 RNA_helicase, 1 hit
SUPFAMiSSF50494 SSF50494, 1 hit
SSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS51874 PCV_3C_PRO, 1 hit
PS50507 RDRP_SSRNA_POS, 1 hit
PS51218 SF3_HELICASE_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPOLFS_SINV3
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C1JCT2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 22, 2017
Last sequence update: November 22, 2017
Last modified: September 18, 2019
This is version 28 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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