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Entry version 64 (12 Aug 2020)
Sequence version 1 (26 May 2009)
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Protein
Submitted name:

Conjugal transfer protein TraM

Gene

traM

Organism
Escherichia coli
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugal transfer protein TraMImported
Submitted name:
Conjugative transfer proteinImported
Submitted name:
Macrophage killing protein with similarity to conjugation proteinImported
Submitted name:
TraMImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traMImported
ORF Names:AM446_01380Imported, AWE53_026725Imported, BMA87_14495Imported, CR539_27465Imported, CRX46_15090Imported, D4638_11350Imported, D4U49_11805Imported, D6T60_14425Imported, D6T98_18390Imported, D6X76_20425Imported, D9L99_26295Imported, DLX38_08010Imported, DM272_16705Imported, DM962_26235Imported, DU321_17705Imported, DW236_22530Imported, EA191_22165Imported, EA410_21935Imported, EF082_21565Imported, EHJ36_20930Imported, ELV08_12565Imported, ELV24_18180Imported, ELV24_27010Imported, EPS94_22150Imported, FNJ69_25905Imported, FY127_08830Imported, HUS41_pI0100Imported, NCTC10766_00090Imported, NCTC7922_00198Imported, NCTC9058_00300Imported, NCTC9062_05652Imported, NCTC9777_04782Imported, RCS90_PI0064Imported, SAMEA3472147_02820Imported, SK85_04802Imported, WQ89_26300Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid RCS90_pIImported
Plasmid URMC_22_p_91832Imported
Plasmid p14EC033gImported
Plasmid p14ec033gImported
Plasmid p168-2Imported
Plasmid pECOEDImported
Plasmid pHUSEC41-1Imported
Plasmid pO26-VirImported
Plasmid rcs90_piImported
Plasmid unnamed3Imported
Plasmid urmc_22_p_91832Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coliImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri562 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000275882 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000366423 Componenti: Unassembled WGS sequence
  • UP000308485 Componenti: Unassembled WGS sequence
  • UP000366120 Componenti: Unassembled WGS sequence
  • UP000262604 Componenti: Plasmid unnamed3
  • UP000404131 Componenti: Unassembled WGS sequence
  • UP000371712 Componenti: Unassembled WGS sequence
  • UP000310691 Componenti: Unassembled WGS sequence
  • UP000346445 Componenti: Unassembled WGS sequence
  • UP000065249 Componenti: Unassembled WGS sequence
  • UP000421033 Componenti: Unassembled WGS sequence
  • UP000322733 Componenti: Unassembled WGS sequence
  • UP000234543 Componenti: Plasmid p14ec033g
  • UP000315393 Componenti: Plasmid p168-2
  • UP000284643 Componenti: Unassembled WGS sequence
  • UP000431974 Componenti: Unassembled WGS sequence
  • UP000254698 Componenti: Unassembled WGS sequence
  • UP000036012 Componenti: Unassembled WGS sequence
  • UP000254480 Componenti: Unassembled WGS sequence
  • UP000331418 Componenti: Unassembled WGS sequence
  • UP000250899 Componenti: Unassembled WGS sequence
  • UP000343782 Componenti: Unassembled WGS sequence
  • UP000254174 Componenti: Unassembled WGS sequence
  • UP000250859 Componenti: Unassembled WGS sequence
  • UP000413862 Componenti: Unassembled WGS sequence
  • UP000306525 Componenti: Plasmid rcs90_pi
  • UP000272662 Componenti: Unassembled WGS sequence
  • UP000320760 Componenti: Unassembled WGS sequence
  • UP000387783 Componenti: Unassembled WGS sequence
  • UP000250437 Componenti: Unassembled WGS sequence
  • UP000036812 Componenti: Unassembled WGS sequence
  • UP000290055 Componenti: Unassembled WGS sequence
  • UP000297379 Componenti: Unassembled WGS sequence
  • UP000376288 Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
1739450at2

Family and domain databases

Conserved Domains Database

More...
CDDi
cd16385, IcmL, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR021055, T4BSS_IcmL/DotI

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF11393, T4BSS_DotI_IcmL, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C1J8N4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSEAQPTSPV SPEADNSGDI YNPVLRTIAQ SEQRAALVPG LVRALLYSGA
60 70 80 90 100
ALCISLVANG IQYWHATGVT REYFATDNGR LVRLAPTSQP AWSQSDVMNF
110 120 130 140 150
GSMTLSEAFN LDFVHYRKQI TTQAPRFSEA GFAGYVNALQ ASNILDTIKK
160 170 180 190 200
EKFNLTTTIG AGTLVNQGQM ENGVWFWKFQ YPVRMRLVGQ TSTRPEQAFT
210 220 230
FEITVRRVDP RIKPGGMEIS QMVSRNAAAG I
Length:231
Mass (Da):25,444
Last modified:May 26, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i247E0679F54649BE
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
FJ386569 Genomic DNA Translation: ACL52072.1
CP024154 Genomic DNA Translation: AUJ98879.1
CP032260 Genomic DNA Translation: AXZ83928.1
HE603110 Genomic DNA Translation: CCE21119.1
AAAAKE010000020 Genomic DNA Translation: EAA0951973.1
AAAASZ010000043 Genomic DNA Translation: EAA1959017.1
AAAAUV010000090 Genomic DNA Translation: EAA2199609.1
AAADNO010000026 Genomic DNA Translation: EAB0914912.1
AAADOH010000039 Genomic DNA Translation: EAB1136052.1
AAADQO010000023 Genomic DNA Translation: EAB1193835.1
AAAFLE010000034 Genomic DNA Translation: EAB6683477.1
AAAFKW010000020 Genomic DNA Translation: EAB6803316.1
AAAFMF010000026 Genomic DNA Translation: EAB6862680.1
AAAFOP010000028 Genomic DNA Translation: EAB7203228.1
REBC01000024 Genomic DNA Translation: KAA1827927.1
RDTR01000025 Genomic DNA Translation: KAA1883616.1
LEUM01000029 Genomic DNA Translation: KLX89803.1
LGZP01000083 Genomic DNA Translation: KNF73454.1
RVWF01000183 Genomic DNA Translation: MMM60740.1
CP041565 Genomic DNA Translation: QDN33495.1
QRIX01000019 Genomic DNA Translation: RHG93891.1
RRVG01000023 Genomic DNA Translation: RRL44487.1
LQSL02000005 Genomic DNA Translation: RRO68344.1
SCIX01000021 Genomic DNA Translation: RXB42775.1
LT985300 Genomic DNA Translation: SPE03563.1
UARX01000002 Genomic DNA Translation: SPW57726.1
UASC01000004 Genomic DNA Translation: SPX22458.1
UCZG01000025 Genomic DNA Translation: SQP97521.1
UGCT01000003 Genomic DNA Translation: STJ03638.1
UGBV01000005 Genomic DNA Translation: STJ26607.1
UGFC01000003 Genomic DNA Translation: STM08602.1
RZDO01000109 Genomic DNA Translation: TFO85419.1
RZDO01000024 Genomic DNA Translation: TFO92067.1
RZDD01000030 Genomic DNA Translation: TFP39467.1
RAZR01000018 Genomic DNA Translation: THK26608.1
NXEQ01000023 Genomic DNA Translation: TKZ07465.1
VTAZ01000019 Genomic DNA Translation: TYR57931.1

NCBI Reference Sequences

More...
RefSeqi
WP_001287545.1, NZ_WVUC01000024.1
YP_002756685.1, NC_012487.1
YP_006940130.1, NC_018995.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AMX17127; AMX17127; A4X18_27005
CRL88833; CRL88833; AL505_190028
KLX89803; KLX89803; SK85_04802
KNF73454; KNF73454; WQ89_26300
KQJ15571; KQJ15571; AM266_11465
KXG94611; KXG94611; HMPREF3041_02848
KXQ42648; KXQ42648; AUQ01_01440
OAO68504; OAO68504; OO96_13935
OAO72093; OAO72093; OK10_20435
OCS72356; OCS72356; BBZ52_24830

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
13877113
7701505

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|562.10851.peg.2842

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FJ386569 Genomic DNA Translation: ACL52072.1
CP024154 Genomic DNA Translation: AUJ98879.1
CP032260 Genomic DNA Translation: AXZ83928.1
HE603110 Genomic DNA Translation: CCE21119.1
AAAAKE010000020 Genomic DNA Translation: EAA0951973.1
AAAASZ010000043 Genomic DNA Translation: EAA1959017.1
AAAAUV010000090 Genomic DNA Translation: EAA2199609.1
AAADNO010000026 Genomic DNA Translation: EAB0914912.1
AAADOH010000039 Genomic DNA Translation: EAB1136052.1
AAADQO010000023 Genomic DNA Translation: EAB1193835.1
AAAFLE010000034 Genomic DNA Translation: EAB6683477.1
AAAFKW010000020 Genomic DNA Translation: EAB6803316.1
AAAFMF010000026 Genomic DNA Translation: EAB6862680.1
AAAFOP010000028 Genomic DNA Translation: EAB7203228.1
REBC01000024 Genomic DNA Translation: KAA1827927.1
RDTR01000025 Genomic DNA Translation: KAA1883616.1
LEUM01000029 Genomic DNA Translation: KLX89803.1
LGZP01000083 Genomic DNA Translation: KNF73454.1
RVWF01000183 Genomic DNA Translation: MMM60740.1
CP041565 Genomic DNA Translation: QDN33495.1
QRIX01000019 Genomic DNA Translation: RHG93891.1
RRVG01000023 Genomic DNA Translation: RRL44487.1
LQSL02000005 Genomic DNA Translation: RRO68344.1
SCIX01000021 Genomic DNA Translation: RXB42775.1
LT985300 Genomic DNA Translation: SPE03563.1
UARX01000002 Genomic DNA Translation: SPW57726.1
UASC01000004 Genomic DNA Translation: SPX22458.1
UCZG01000025 Genomic DNA Translation: SQP97521.1
UGCT01000003 Genomic DNA Translation: STJ03638.1
UGBV01000005 Genomic DNA Translation: STJ26607.1
UGFC01000003 Genomic DNA Translation: STM08602.1
RZDO01000109 Genomic DNA Translation: TFO85419.1
RZDO01000024 Genomic DNA Translation: TFO92067.1
RZDD01000030 Genomic DNA Translation: TFP39467.1
RAZR01000018 Genomic DNA Translation: THK26608.1
NXEQ01000023 Genomic DNA Translation: TKZ07465.1
VTAZ01000019 Genomic DNA Translation: TYR57931.1
RefSeqiWP_001287545.1, NZ_WVUC01000024.1
YP_002756685.1, NC_012487.1
YP_006940130.1, NC_018995.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAMX17127; AMX17127; A4X18_27005
CRL88833; CRL88833; AL505_190028
KLX89803; KLX89803; SK85_04802
KNF73454; KNF73454; WQ89_26300
KQJ15571; KQJ15571; AM266_11465
KXG94611; KXG94611; HMPREF3041_02848
KXQ42648; KXQ42648; AUQ01_01440
OAO68504; OAO68504; OO96_13935
OAO72093; OAO72093; OK10_20435
OCS72356; OCS72356; BBZ52_24830
GeneIDi13877113
7701505
PATRICifig|562.10851.peg.2842

Phylogenomic databases

OrthoDBi1739450at2

Family and domain databases

CDDicd16385, IcmL, 1 hit
InterProiView protein in InterPro
IPR021055, T4BSS_IcmL/DotI
PfamiView protein in Pfam
PF11393, T4BSS_DotI_IcmL, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC1J8N4_ECOLX
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C1J8N4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: August 12, 2020
This is version 64 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

PlasmidImported
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