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Entry version 56 (13 Feb 2019)
Sequence version 1 (26 May 2009)
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Protein

Arabinogalactan endo-beta-1,4-galactanase

Gene

galA

Organism
Bifidobacterium breve (strain NCIMB 8807 / UCC2003)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • The enzyme specifically hydrolyzes (1->4)-beta-D-galactosidic linkages in type I arabinogalactans.UniRule annotation EC:3.2.1.89

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosidaseUniRule annotationImported, Hydrolase

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
BBRE326426:G1GZ8-473-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

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CAZyi
CBM61 Carbohydrate-Binding Module Family 61
GH53 Glycoside Hydrolase Family 53

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Arabinogalactan endo-beta-1,4-galactanaseUniRule annotation (EC:3.2.1.89UniRule annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:galAImported
Ordered Locus Names:Bbr_0422Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBifidobacterium breve (strain NCIMB 8807 / UCC2003)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri326426 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaActinobacteriaBifidobacterialesBifidobacteriaceaeBifidobacterium
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000297 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei871 – 892HelicalSequence analysisAdd BLAST22

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 30UniRule annotationAdd BLAST30
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500736090931 – 897Arabinogalactan endo-beta-1,4-galactanaseUniRule annotationAdd BLAST867

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
326426.Bbr_0422

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini445 – 508Big_4InterPro annotationAdd BLAST64
Domaini749 – 821Ig-like_bactInterPro annotationAdd BLAST73

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the glycosyl hydrolase 53 family.UniRule annotation

Keywords - Domaini

SignalUniRule annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4106FKC Bacteria
COG3867 LUCA

KEGG Orthology (KO)

More...
KOi
K01224

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.260, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011081 Big_4
IPR008979 Galactose-bd-like_sf
IPR011683 Glyco_hydro_53
IPR017853 Glycoside_hydrolase_SF
IPR022038 Ig-like_bact

The PANTHER Classification System

More...
PANTHERi
PTHR34983 PTHR34983, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07523 Big_3, 1 hit
PF07532 Big_4, 1 hit
PF07745 Glyco_hydro_53, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51445 SSF51445, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

C1J0P1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRRNTALTRI MASSVAAIML CAGGMFTANA AEEEPVKAAV SVKAIQGLSD
60 70 80 90 100
DFIGGMDVSS MLSLEESGVT FKNANDEVED LFTLLKESGV NYVRLRVWND
110 120 130 140 150
PFTADGQGYG GGNVNADRAL TMAKRATAAG LKVLVDFHYS DFWADPSKQQ
160 170 180 190 200
VPKAWKSFEG DVDKTADTIY DYTKQTLTTF KQAGVDVGMV QVGNETTAKI
210 220 230 240 250
AGISGWDGMS KVFSAGSKAI REVLPEAKVV IHFTNPEKAG TYATYAKQLS
260 270 280 290 300
NHNVDYDVFA SSYYPFWHGT TENLTSVLKN VASTYKKDVM VAETSWAYTL
310 320 330 340 350
DDGDDDSNTV PSKVTANNLK KYDISPQGQA DEIRAVAEAV NNIGDNDGDG
360 370 380 390 400
KNDGLGVFYW EPAWVPVGTG GKDNAELVDT WNKYGGGWAT EAAGEYDPND
410 420 430 440 450
AGLYWGGSGV DNQALFDFDG KALASLPTFK YIHTGAVTDH VFTKIDPVEI
460 470 480 490 500
TATDSDSIDA IKAQLPSEVA AHYQDGVDET ETVTWQSAAL DWIRGAGTYT
510 520 530 540 550
ITGTTNAGHD VTATITVTAT PAKDYVTDGN FENAENDKNW TITGTGASIT
560 570 580 590 600
EDSGNAADGK RALKFWASDA YSFSATQTIT GLEPGEYVLT AMSQGAAADN
610 620 630 640 650
AAIADGVTLS ATAGGKTTSD ALELNGWVKF DTATVPVTVG ADGTATITIT
660 670 680 690 700
GNLPADAWGN VDKVSLVKKT ETPVKPSTEN LDKAVAEAGK INRDECTNES
710 720 730 740 750
LAKLDQALAA ADVLLAGSAY TEQDVNDVTK LVSDAIAGLA PKEVSSLTVT
760 770 780 790 800
PSKTTYQVGD VIDADHDLKV VGNYSAGMGN VTLSADQFTL DYDFSAPADA
810 820 830 840 850
AKVTVTLKSN PNVTETYTVA VTSRAEGGSG NGSDGAGNGG ATINPDTGEG
860 870 880 890
DKTNGANGGK ITGVLSNTGS AVTAVGLAVV VLGVAGGVSL ALRRKRS
Length:897
Mass (Da):93,938
Last modified:May 26, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8CD38B2571C893E0
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
CP000303 Genomic DNA Translation: ABE95120.1
HM156542 Genomic DNA Translation: ADO51669.1

NCBI Reference Sequences

More...
RefSeqi
WP_015438444.1, NC_020517.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABE95120; ABE95120; Bbr_0422

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bbru:Bbr_0422

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|326426.4.peg.468

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000303 Genomic DNA Translation: ABE95120.1
HM156542 Genomic DNA Translation: ADO51669.1
RefSeqiWP_015438444.1, NC_020517.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi326426.Bbr_0422

Protein family/group databases

CAZyiCBM61 Carbohydrate-Binding Module Family 61
GH53 Glycoside Hydrolase Family 53

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE95120; ABE95120; Bbr_0422
KEGGibbru:Bbr_0422
PATRICifig|326426.4.peg.468

Phylogenomic databases

eggNOGiENOG4106FKC Bacteria
COG3867 LUCA
KOiK01224

Enzyme and pathway databases

BioCyciBBRE326426:G1GZ8-473-MONOMER

Family and domain databases

Gene3Di2.60.120.260, 1 hit
InterProiView protein in InterPro
IPR011081 Big_4
IPR008979 Galactose-bd-like_sf
IPR011683 Glyco_hydro_53
IPR017853 Glycoside_hydrolase_SF
IPR022038 Ig-like_bact
PANTHERiPTHR34983 PTHR34983, 1 hit
PfamiView protein in Pfam
PF07523 Big_3, 1 hit
PF07532 Big_4, 1 hit
PF07745 Glyco_hydro_53, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC1J0P1_BIFBU
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C1J0P1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: February 13, 2019
This is version 56 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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