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Protein

Protein REVEILLE 5

Gene

RVE5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi81 – 104H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA-binding transcription factor activity Source: TAIR

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Protein REVEILLE 5
Gene namesi
Name:RVE5
Ordered Locus Names:At4g01280
ORF Names:F2N1.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G01280
TAIRilocus:2124928 AT4G01280

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004248381 – 303Protein REVEILLE 5Add BLAST303

Proteomic databases

PaxDbiC0SVG5
PRIDEiC0SVG5

PTM databases

iPTMnetiC0SVG5

Expressioni

Gene expression databases

ExpressionAtlasiC0SVG5 baseline and differential
GenevisibleiC0SVG5 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G01280.2

Structurei

3D structure databases

ProteinModelPortaliC0SVG5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini54 – 108HTH myb-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiKOG0724 Eukaryota
COG5269 LUCA
HOGENOMiHOG000237512
InParanoidiC0SVG5
OMAiCEKPHRV
OrthoDBiEOG09360I2V
PhylomeDBiC0SVG5

Family and domain databases

CDDicd00167 SANT, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR006447 Myb_dom_plants
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 1 hit
SMARTiView protein in SMART
SM00717 SANT, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 1 hit

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: C0SVG5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MVSVNPRPKG FPVFDSSNMS LPSSDGFGSI PATGRTSTVS FSEDPTTKIR
60 70 80 90 100
KPYTIKKSRE NWTDQEHDKF LEALHLFDRD WKKIEAFVGS KTVVQIRSHA
110 120 130 140 150
QKYFLKVQKS GANEHLPPPR PKRKASHPYP IKAPKNVAYT SLPSSSTLPL
160 170 180 190 200
LEPGYLYSSD SKSLMGNQAV CASTSSSWNH ESTNLPKPVI EVEEPGVSAT
210 220 230 240 250
APLPNNRCRQ EDTERVRAVT KPNNEESCEK PHRVMPNFAE VYSFIGSVFD
260 270 280 290 300
PNTSGHLQRL KQMDPINMET VLLLMQNLSV NLTSPEFAEQ RRLISSYSAK

ALK
Length:303
Mass (Da):33,890
Last modified:May 26, 2009 - v1
Checksum:iBD4DDB9A8515BA1D
GO
Isoform 2 (identifier: C0SVG5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     192-192: Missing.

Show »
Length:302
Mass (Da):33,791
Checksum:i7773514F9249F354
GO

Sequence cautioni

The sequence CAB80937 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_053509192Missing in isoform 2. 2 Publications1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ937212 mRNA Translation: CAI77453.1
AL161491 Genomic DNA Translation: CAB80937.1 Different initiation.
CP002687 Genomic DNA Translation: AEE82003.1
CP002687 Genomic DNA Translation: AEE82004.1
AB493668 mRNA Translation: BAH30506.1
BT024711 mRNA Translation: ABD59049.1
AY519513 mRNA Translation: AAS09983.1
PIRiG85016
RefSeqiNP_001031568.1, NM_001036491.4 [C0SVG5-1]
NP_192037.2, NM_116358.6 [C0SVG5-2]
UniGeneiAt.44234

Genome annotation databases

EnsemblPlantsiAT4G01280.1; AT4G01280.1; AT4G01280 [C0SVG5-2]
AT4G01280.2; AT4G01280.2; AT4G01280 [C0SVG5-1]
GeneIDi827903
GrameneiAT4G01280.1; AT4G01280.1; AT4G01280 [C0SVG5-2]
AT4G01280.2; AT4G01280.2; AT4G01280 [C0SVG5-1]
KEGGiath:AT4G01280

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ937212 mRNA Translation: CAI77453.1
AL161491 Genomic DNA Translation: CAB80937.1 Different initiation.
CP002687 Genomic DNA Translation: AEE82003.1
CP002687 Genomic DNA Translation: AEE82004.1
AB493668 mRNA Translation: BAH30506.1
BT024711 mRNA Translation: ABD59049.1
AY519513 mRNA Translation: AAS09983.1
PIRiG85016
RefSeqiNP_001031568.1, NM_001036491.4 [C0SVG5-1]
NP_192037.2, NM_116358.6 [C0SVG5-2]
UniGeneiAt.44234

3D structure databases

ProteinModelPortaliC0SVG5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G01280.2

PTM databases

iPTMnetiC0SVG5

Proteomic databases

PaxDbiC0SVG5
PRIDEiC0SVG5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G01280.1; AT4G01280.1; AT4G01280 [C0SVG5-2]
AT4G01280.2; AT4G01280.2; AT4G01280 [C0SVG5-1]
GeneIDi827903
GrameneiAT4G01280.1; AT4G01280.1; AT4G01280 [C0SVG5-2]
AT4G01280.2; AT4G01280.2; AT4G01280 [C0SVG5-1]
KEGGiath:AT4G01280

Organism-specific databases

AraportiAT4G01280
TAIRilocus:2124928 AT4G01280

Phylogenomic databases

eggNOGiKOG0724 Eukaryota
COG5269 LUCA
HOGENOMiHOG000237512
InParanoidiC0SVG5
OMAiCEKPHRV
OrthoDBiEOG09360I2V
PhylomeDBiC0SVG5

Miscellaneous databases

PROiPR:C0SVG5

Gene expression databases

ExpressionAtlasiC0SVG5 baseline and differential
GenevisibleiC0SVG5 AT

Family and domain databases

CDDicd00167 SANT, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR006447 Myb_dom_plants
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 1 hit
SMARTiView protein in SMART
SM00717 SANT, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
TIGRFAMsiTIGR01557 myb_SHAQKYF, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRVE5_ARATH
AccessioniPrimary (citable) accession number: C0SVG5
Secondary accession number(s): Q571Z4, Q9M142
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 22, 2014
Last sequence update: May 26, 2009
Last modified: September 12, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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