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Protein
Submitted name:

Staphylococcal nuclease domain-containing protein 1

Gene

SND1

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Staphylococcal nuclease domain-containing protein 1Imported
Gene namesi
Name:SND1Imported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo

Subcellular locationi

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 104TNase-likeInterPro annotationAdd BLAST104
Domaini131 – 266TNase-likeInterPro annotationAdd BLAST136
Domaini279 – 437TNase-likeInterPro annotationAdd BLAST159
Domaini466 – 601TNase-likeInterPro annotationAdd BLAST136
Domaini670 – 729TudorInterPro annotationAdd BLAST60

Family and domain databases

Gene3Di2.40.50.90, 6 hits
InterProiView protein in InterPro
IPR016685 Silence_cplx_Nase-comp_TudorSN
IPR035437 SNase_OB-fold_sf
IPR016071 Staphylococal_nuclease_OB-fold
IPR002999 Tudor
PfamiView protein in Pfam
PF00565 SNase, 4 hits
PF00567 TUDOR, 1 hit
PIRSFiPIRSF017179 RISC-Tudor-SN, 1 hit
SMARTiView protein in SMART
SM00318 SNc, 4 hits
SM00333 TUDOR, 1 hit
PROSITEiView protein in PROSITE
PS50830 TNASE_3, 4 hits
PS50304 TUDOR, 1 hit

Sequencei

Sequence statusi: Fragment.

C0PUJ3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
PQSQPDQKDT PDEPYAFQAR EFLRKMLIGK EVCFTVEVKT ALGREYGMVY
60 70 80 90 100
LGRDTTGENI AESLVNEGLA TVRREGIRGN NPDQARLCDL EDQAKASKKG
110 120 130 140 150
MWTEGGGTNT IRDLKYIIEN PRNFVDSMHQ KPVNAIIEHV RDGSVVRALL
160 170 180 190 200
LPDYYLVTVM LSGVKCPTFK READGTESPE PFAAEAKFFT ESRLLQRDVQ
210 220 230 240 250
IILESCPNQV ILGTVLHPNG NITELLLKEG FARCVDWSMA VYTQGAEKLR
260 270 280 290 300
AGEKSAKERK VRIWKDYVAP TANMNQKDRQ FVAKVMQVVN ADAVVVKLNS
310 320 330 340 350
GEYKTIHLSS IRPPRIEGEE KNKDKDKRFR PIYDIPYMFE AREFMRKKII
360 370 380 390 400
GKKVNVTVDY IRAATSSSET STIPAFAERT CATVTIGGIN IAEALVSKGF
410 420 430 440 450
ATVIRYRQDD DQRSSHYDEL LAAEARAIKN GKGLHSKKEV PIHRVADISG
460 470 480 490 500
ETQKAKQFLP FLQRAGRSEA VVEYVFSGSR LKLYMPKETC LITFLLAGIE
510 520 530 540 550
CPRGSRNMPG GMQVAEPFSD EAMAFTKELV LQREVEVEVE SMDKAGNFIG
560 570 580 590 600
WLHIEGVNLS VALVENALSK VHFTAERSSY YKTLVSGEEA SRLRKDKIWA
610 620 630 640 650
NYEEKKVEEV VHVMEEKERT ANYRAVYVTE ITDTMHFYTQ DVETGTQLEN
660 670 680 690 700
LMETMRAEIA AQPPVEGSYA ARRGDYCIAN FTADGEWYRA RVEKVQSPAK
710 720 730 740 750
VHVFYIDYGN REIVPSTRLA VIPPAFSTRT LAAQATEYAF AYIQVPQDED
760 770 780 790 800
ARADVVDSLV RDIQNTQCLL NVEHSGVTCP HVTLQFADSK DDVGLSLVKE
810 820 830 840 850
GMVMVDVRKE KHLQKMVTEY LNGQESAKTA RLNIWRYGDF RDDDADEFGY

KLKK
Length:854
Mass (Da):96,389
Last modified:May 5, 2009 - v1
Checksum:i55E5E0E3B9BF3CDD
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT072467 mRNA Translation: ACN60284.1
UniGeneiSsa.3280

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT072467 mRNA Translation: ACN60284.1
UniGeneiSsa.3280

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.40.50.90, 6 hits
InterProiView protein in InterPro
IPR016685 Silence_cplx_Nase-comp_TudorSN
IPR035437 SNase_OB-fold_sf
IPR016071 Staphylococal_nuclease_OB-fold
IPR002999 Tudor
PfamiView protein in Pfam
PF00565 SNase, 4 hits
PF00567 TUDOR, 1 hit
PIRSFiPIRSF017179 RISC-Tudor-SN, 1 hit
SMARTiView protein in SMART
SM00318 SNc, 4 hits
SM00333 TUDOR, 1 hit
PROSITEiView protein in PROSITE
PS50830 TNASE_3, 4 hits
PS50304 TUDOR, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiC0PUJ3_SALSA
AccessioniPrimary (citable) accession number: C0PUJ3
Entry historyiIntegrated into UniProtKB/TrEMBL: May 5, 2009
Last sequence update: May 5, 2009
Last modified: February 28, 2018
This is version 29 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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