Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 83 (12 Aug 2020)
Sequence version 1 (05 May 2009)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein

Auxin response factor

Gene

100273501

Organism
Zea mays (Maize)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).UniRule annotationARBA annotation

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-bindingUniRule annotationARBA annotation
Biological processAuxin signaling pathwayUniRule annotationARBA annotation, Transcription, Transcription regulationUniRule annotationARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Auxin response factorUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:100273501Imported
Synonyms:ARF25Imported
ORF Names:ZEAMMB73_Zm00001d011953Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiZea mays (Maize)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri4577 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeTripsacinaeZea
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007305 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 8

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotationARBA annotation

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
C0PH36, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimers and heterodimers.

UniRule annotation

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
4577.GRMZM2G116557_P04

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
C0PH36

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini127 – 229TF-B3InterPro annotationAdd BLAST103
Domaini692 – 785PB1InterPro annotationAdd BLAST94

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni344 – 390DisorderedSequence analysisAdd BLAST47
Regioni674 – 693DisorderedSequence analysisAdd BLAST20
Regioni778 – 806DisorderedSequence analysisAdd BLAST29

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi357 – 380Pro-richSequence analysisAdd BLAST24

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the ARF family.UniRule annotationARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QRXI, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002626_2_2_1

Database of Orthologous Groups

More...
OrthoDBi
214403at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd10017, B3_DNA, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.330.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR033389, AUX/IAA_dom
IPR010525, Auxin_resp
IPR003340, B3_DNA-bd
IPR015300, DNA-bd_pseudobarrel_sf
IPR000270, PB1_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02309, AUX_IAA, 2 hits
PF06507, Auxin_resp, 1 hit
PF02362, B3, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01019, B3, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF101936, SSF101936, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50863, B3, 1 hit
PS51745, PB1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 5 potential isoforms that are computationally mapped.Show allAlign All

C0PH36-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPPAAMALPS QAPSNSGDPL YPELWRACAG PLVTVPRVGD LVFYFPQGHI
60 70 80 90 100
EQVEASMNQV AGNPMRLYDL PSKLLCRVLN VELKAETDTD EVYAQIMLMP
110 120 130 140 150
EPEQNDVAAE KTSSGSAAPP RPAVRSFCKT LTASDTSTHG GFSVLRRHAD
160 170 180 190 200
ECLPALDMSQ SPPTQELVAK DLHGMEWRFR HIFRGQPRRH LLQSGWSVFV
210 220 230 240 250
SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QLSNVPSSVI SSQSMHLGVL
260 270 280 290 300
ATAWHAINTK SMFTVYYKPR TSPSEFIIPY DQYMESVKNN YSIGMRFRMR
310 320 330 340 350
FEGEEAPEQR FTGTIVGCEN LDPLWPDSSW RYLKVRWDEP STIPRPDKVS
360 370 380 390 400
PWKIEPASSP PVNPLPLSRG KRPRQNAPPP SPESSVLTKE GATKIDTDSA
410 420 430 440 450
QTPHQNSVLQ SQEQMSFRNN LTESTDSDST VQKQMMWSPS PNGKVHTNFQ
460 470 480 490 500
PRPAMDNWMP LGRRETDFKD TRSAFKDART ASQSFGDTQG FFMQAYDDSR
510 520 530 540 550
HRLSFNNQFQ DQGSAHRFAD PYFYMPQQPS LTVESGTRTQ TANNDLRFWS
560 570 580 590 600
ERNSMYGNPS DQQQGFSFGQ NTSSWLNQPL PQVEQSRVVR PHATVAPFDL
610 620 630 640 650
EKTREGSGFK IFGFQVDTTN PSPVQLSSPL SAIREHVVQT RPSAPVNELQ
660 670 680 690 700
PVQIECLPEV SVSTAGTAAE NIQQVQQSSK DIQSKSQGAS TRSCTKVHKQ
710 720 730 740 750
GVALGRSVDL SKFTDYGELK AELDKMFEFE GELVSANRNW QIVYTDNEGD
760 770 780 790 800
MMLVGDDPWE EFCNIVRKIY IYTKEEVQKM NSKSSVPRKE EPPAAGEGCA

AAAANE
Length:806
Mass (Da):90,231
Last modified:May 5, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBF30DBBD095F7636
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1D6G519A0A1D6G519_MAIZE
Auxin response factor
100273501 ZEAMMB73_Zm00001d011953
721Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6G521A0A1D6G521_MAIZE
Auxin response factor
100273501 ZEAMMB73_Zm00001d011953
649Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6G518A0A1D6G518_MAIZE
Auxin-responsive protein
100273501 ZEAMMB73_Zm00001d011953
584Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6G517A0A1D6G517_MAIZE
Auxin-responsive protein
100273501 ZEAMMB73_Zm00001d011953
578Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1D6G520A0A1D6G520_MAIZE
Auxin-responsive protein
100273501 ZEAMMB73_Zm00001d011953
630Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BT067605 mRNA Translation: ACN34502.1
KJ726815 mRNA Translation: AIB04306.1
CM000784 Genomic DNA Translation: AQK98377.1
CM000784 Genomic DNA Translation: AQK98379.1
CM000784 Genomic DNA Translation: AQK98382.1
CM000784 Genomic DNA Translation: AQK98384.1

NCBI Reference Sequences

More...
RefSeqi
XP_008656904.1, XM_008658682.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Zm00001d011953_T001; Zm00001d011953_P001; Zm00001d011953
Zm00001d011953_T002; Zm00001d011953_P002; Zm00001d011953
Zm00001d011953_T008; Zm00001d011953_P008; Zm00001d011953
Zm00001d011953_T009; Zm00001d011953_P009; Zm00001d011953

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
100273501

Gramene; a comparative resource for plants

More...
Gramenei
Zm00001d011953_T001; Zm00001d011953_P001; Zm00001d011953
Zm00001d011953_T002; Zm00001d011953_P002; Zm00001d011953
Zm00001d011953_T008; Zm00001d011953_P008; Zm00001d011953
Zm00001d011953_T009; Zm00001d011953_P009; Zm00001d011953

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
zma:100273501

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT067605 mRNA Translation: ACN34502.1
KJ726815 mRNA Translation: AIB04306.1
CM000784 Genomic DNA Translation: AQK98377.1
CM000784 Genomic DNA Translation: AQK98379.1
CM000784 Genomic DNA Translation: AQK98382.1
CM000784 Genomic DNA Translation: AQK98384.1
RefSeqiXP_008656904.1, XM_008658682.1

3D structure databases

SMRiC0PH36
ModBaseiSearch...

Protein-protein interaction databases

STRINGi4577.GRMZM2G116557_P04

Genome annotation databases

EnsemblPlantsiZm00001d011953_T001; Zm00001d011953_P001; Zm00001d011953
Zm00001d011953_T002; Zm00001d011953_P002; Zm00001d011953
Zm00001d011953_T008; Zm00001d011953_P008; Zm00001d011953
Zm00001d011953_T009; Zm00001d011953_P009; Zm00001d011953
GeneIDi100273501
GrameneiZm00001d011953_T001; Zm00001d011953_P001; Zm00001d011953
Zm00001d011953_T002; Zm00001d011953_P002; Zm00001d011953
Zm00001d011953_T008; Zm00001d011953_P008; Zm00001d011953
Zm00001d011953_T009; Zm00001d011953_P009; Zm00001d011953
KEGGizma:100273501

Phylogenomic databases

eggNOGiENOG502QRXI, Eukaryota
HOGENOMiCLU_002626_2_2_1
OrthoDBi214403at2759

Gene expression databases

ExpressionAtlasiC0PH36, baseline and differential

Family and domain databases

CDDicd10017, B3_DNA, 1 hit
Gene3Di2.40.330.10, 1 hit
InterProiView protein in InterPro
IPR033389, AUX/IAA_dom
IPR010525, Auxin_resp
IPR003340, B3_DNA-bd
IPR015300, DNA-bd_pseudobarrel_sf
IPR000270, PB1_dom
PfamiView protein in Pfam
PF02309, AUX_IAA, 2 hits
PF06507, Auxin_resp, 1 hit
PF02362, B3, 1 hit
SMARTiView protein in SMART
SM01019, B3, 1 hit
SUPFAMiSSF101936, SSF101936, 1 hit
PROSITEiView protein in PROSITE
PS50863, B3, 1 hit
PS51745, PB1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiC0PH36_MAIZE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C0PH36
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 5, 2009
Last sequence update: May 5, 2009
Last modified: August 12, 2020
This is version 83 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again